Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 44 / 7e-06 receptor-like protein kinase-related family protein (.1) AT2G01660 42 / 3e-05 PDLP6 plasmodesmata-located protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028052 [exp] 219 / 7e-75 ND 42 / 5e-05 Lus10008315 [exp] 74 / 3e-17 ND / Lus10003752 [exp] 54 / 8e-10 AT1G70690 41 / 9e-05 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10028046 [exp] 47 / 3e-07 AT1G70690 41 / 1e-04 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10010115 [exp] 47 / 3e-07 AT5G48540 41 / 5e-05 receptor-like protein kinase-related family protein (.1) Lus10003754 [exp] 45 / 2e-06 AT1G04520 39 / 3e-04 plasmodesmata-located protein 2 (.1) Lus10003755 [exp] 45 / 3e-06 ND 37 / 0.002 Lus10028027 [exp] 39 / 0.0003 ND 38 / 0.002 Lus10003753 [exp] 38 / 0.0005 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10035754 pacid=23147531 polypeptide=Lus10035754 locus=Lus10035754.g ID=Lus10035754.BGIv1.0 annot-version=v1.0 ATGAAATATTCAACTACAAGTGTCGTTACGATCTTTTTCTTCGTTCTCTCAATCTTCGCCACCAACAAATTCATCGCCAATGGTGACGTCAACTCGGACG TACATGCGGTCAAAGGACCAACCTGCAGCCAAAACAACGTGACACATAAATCTTTCAAGATGACGATGCCAATTCTATTGTTGAAGCTTGTGGCCGAGAC CCCGAAACACAAAGACAATTCGACCGGAGGGCATAGCTACAATGGGAAATCGGACTTGGGGCCGAAAGGAGAAGGGAGCGCTAGCTGCAACAAGGATAAG GACCAGACTCAGTGCGAAGTGTGTCTTGCTGATGCCATGGAACGTCTAACCGATGTTTGTAAAGGGAAAGCCTACGGCAGCGTCGAGCTTAAAGCCTGCC AAATGTCTTTCAAGGAGGATTGA
AA sequence Show only first row Show all	>Lus10035754 pacid=23147531 polypeptide=Lus10035754 locus=Lus10035754.g ID=Lus10035754.BGIv1.0 annot-version=v1.0 MKYSTTSVVTIFFFVLSIFATNKFIANGDVNSDVHAVKGPTCSQNNVTHKSFKMTMPILLLKLVAETPKHKDNSTGGHSYNGKSDLGPKGEGSASCNKDK DQTQCEVCLADAMERLTDVCKGKAYGSVELKACQMSFKED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10035754 [exp]	0	1
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10034287 [exp]	1.0	0.8336
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	7.5	0.7980
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	10.0	0.7861
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	10.7	0.7910
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	13.0	0.7565
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	14.1	0.7717
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	17.7	0.7667
					Lus10008791 [exp]	19.1	0.7667
AT4G39050			Kinesin motor family protein (...		Lus10017906 [exp]	19.6	0.6777
					Lus10021851 [exp]	20.4	0.7667

Compare expression of checked genes

Lus10035754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.