Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 990 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 785 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 360 / 5e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037332 [exp] 1367 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10034843 [exp] 1244 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033387 [exp] 752 / 0 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 744 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 723 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10018297 [exp] 334 / 3e-103 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 332 / 3e-102 AT1G10180 854 / 0.0 unknown protein Lus10022896 [exp] 238 / 6e-67 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 182 / 2e-48 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 1150 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 1113 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 815 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 349 / 1e-108 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 335 / 3e-103 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 295 / 5e-90 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 233 / 4e-65 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10035756 pacid=23147403 polypeptide=Lus10035756 locus=Lus10035756.g ID=Lus10035756.BGIv1.0 annot-version=v1.0 ATGTCCCCCGCGAAGGCCGCTCGGTCCAGGGCGGCTCCGCAGAAGGAAAATGGGTCGGCCAAGACGGAGGAAGGACTCGCCGTTTTCAAGTCCGATAAGT TCGATGCTGATGCTTATGTTCAGTCCAAATGCTCTCTCGATGACAAGGAAATAAGGCAACTCTGCTCGTATCTTTTGGATTTGAAGAAAGCTTCCGCTGA AGAAATGCGGAAAAGTGTGTACGCAAATTATCCTGCTTTTATACGTACATCGAAAGAGATATCGGATTTGGAAGGAGAGCTTTCATCTATTAGAACCCTA CTGTCCACTCAGGCTACTTTAATTCATAGTTTAGCTGAGGGTGTTGATATTGATCAATTGTCTGAAAGAGTTTCAGAAGAATCCTCTGTAAATAGCTTGT TAGACAGTGAAGATAGAGAACCTTCTGACCTGGAGAAATGGTCTATTGAATTCCCTGATCTCCTTGATGTCTTATTAGCTGAGAGGAGGGTGGATGAAGC TCTTGCAGCCTTTGAAGACGGGGAACAATTAGTTTCTGGAGCGAAAGAGGCAAAATCATTGAGTCCTGATGCATTAACATCGTTGGAGACTGCAATTATG CAACGGAAGCAAAAGTTAGCTGATCAGCTTGCAGAAGCAACATGTCAACCTTCTACCCGAGGTACTGAACTCCGTGCAGCTGTAAGAGCTCTCAAAGGCC TTGGGGATGGCCCTCGTGCTCATAGTTTGTTACTCAGTGCACATTTCCAACGGTACCAGTATAACATGCAAAGTCTCCGGCCATCAAACACTTCTTATGG AGGAGCATATACTGCCGCTCTTTCCCAGATAGTTTTCTCGGCTATTGCTCAAGCTGCTACTGATTCTTTGGCAATTTTTGGTAAAGAGCCGGCATATTCT TCTGAGCTTGTGATGTGGGCTACTAAGCAAACAGAGTCGTTTGCTGGTCTTTTTAAAAGAAAAGCCTTAGCATCATCAGCAGCTGCAGGTGGTTTAAGAG CTGCCGCTGAGTGTGTACAGATAGCATTGGGTCATTGCTCTTTGTTGGAATCCCGTGGCTTGGCAATTTGCCCTGTGCTCTTAAAACTCTTTAGACCGAG TGTTGAACAAGCAGTAGATGCTAATCTAAAACGAATTGAAGAGAGCACTGCTGCTATGGCTGCTGCTGATGATTGGGTACTTACTCACTCTCCGGTAGGC ACCCGGCAGTCAGGAAGGACTTTTGTTTCATCTCTTGGTAATGCAATTGCTTTCCAGCATAAACTCACCAGCAGTGCCCATCGCTTCAACCTAATGGTCC AGGACTTCTTTGAGGACGTTGCACCGCTTCTAAGTATGCTGGGAGGTCAGACACTGGATTCTGTTTACCAAGTGTTCAACTCGTATATTAACATGCTTAT TAAGGCATTGCCAGGTTCGATGGAGGAAGAAGCAAATTTTGAAGGCTATGTTAATAAAATTGTCAGATTGGCTGAAACAGAAGAAGAGCAGATTGCATTA TTAGCAAATGCATCATTGTTAGCTGATGAACTACTGCCTCGTGCAGCAATGAAACTTTATCCTATGAATCATACTAATTATAAGGATGACAGAAGTAGGA GACATGCTGAGAAACCAATTCGTCATCCTGAGCAACGAGAATGGAGGAAGCGCCTTGTTTCTGCTGTTGATAGGTTGAAGGATACTTTCTGCCGACAGCA TGCGCTAGATCTCATTTTTACTGAAGATGGTGATAGTCATCTTACTGCTGAAATGTACATAAACATGGACAGTAACGTGGAGGATGTAGAATGGCTTCCT TCCCTTATATTCCAGGAACTTTATGTAAAACTGAGTAGGATGGCTAGTATAACTGCCGAGATGTTTGTTGGGAGGGAAAGATTCGCCACATTACTGCTGA TGAGACTTACAGAAACAGTCATCTTATGGCTGTCAGAAGATCAAAGCTTCTGGGACGACATAGAAGAAGGGCCTAGGGCACTAGGTCCTTTGGGCTTACA ACAGTTCTATCTTGATATGAAGTTTGTGCTGTGCTTCGCTGCCCAAGGTCGCTACCTATCACGAAATTTGCATCGGGTTGTGAACGAGATTATCAGGAAG GGCGTGGCAGCATTTGCGTCCACCGGAATGGATCCTGACAGGGTACTTCCAGAAGATGAATGGTTTATGGAGGTAAGCCAAGATGCCATGGAAAGATTAA GCGGGAAACCGAAAGCCATAGATGGAGATAGGGAAGTGAACAGCCCAACAGCATCAGTGTCTGCACAGTCAATTTCGTCCGTAAGATCTCATGGGAGTAG CTGA
AA sequence Show only first row Show all	>Lus10035756 pacid=23147403 polypeptide=Lus10035756 locus=Lus10035756.g ID=Lus10035756.BGIv1.0 annot-version=v1.0 MSPAKAARSRAAPQKENGSAKTEEGLAVFKSDKFDADAYVQSKCSLDDKEIRQLCSYLLDLKKASAEEMRKSVYANYPAFIRTSKEISDLEGELSSIRTL LSTQATLIHSLAEGVDIDQLSERVSEESSVNSLLDSEDREPSDLEKWSIEFPDLLDVLLAERRVDEALAAFEDGEQLVSGAKEAKSLSPDALTSLETAIM QRKQKLADQLAEATCQPSTRGTELRAAVRALKGLGDGPRAHSLLLSAHFQRYQYNMQSLRPSNTSYGGAYTAALSQIVFSAIAQAATDSLAIFGKEPAYS SELVMWATKQTESFAGLFKRKALASSAAAGGLRAAAECVQIALGHCSLLESRGLAICPVLLKLFRPSVEQAVDANLKRIEESTAAMAAADDWVLTHSPVG TRQSGRTFVSSLGNAIAFQHKLTSSAHRFNLMVQDFFEDVAPLLSMLGGQTLDSVYQVFNSYINMLIKALPGSMEEEANFEGYVNKIVRLAETEEEQIAL LANASLLADELLPRAAMKLYPMNHTNYKDDRSRRHAEKPIRHPEQREWRKRLVSAVDRLKDTFCRQHALDLIFTEDGDSHLTAEMYINMDSNVEDVEWLP SLIFQELYVKLSRMASITAEMFVGRERFATLLLMRLTETVILWLSEDQSFWDDIEEGPRALGPLGLQQFYLDMKFVLCFAAQGRYLSRNLHRVVNEIIRK GVAAFASTGMDPDRVLPEDEWFMEVSQDAMERLSGKPKAIDGDREVNSPTASVSAQSISSVRSHGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	2.4	0.8550
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	3.2	0.8003
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	3.7	0.7614
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	4.2	0.7569
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	4.9	0.7747
AT5G40450			unknown protein		Lus10001136 [exp]	5.0	0.7664
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	7.3	0.7903
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	10.5	0.7535
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	10.7	0.7660
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	11.3	0.7417

Compare expression of checked genes

Lus10035756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.