Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17240 455 / 8e-157 SDG40 SET domain group 40 (.1) AT5G14260 50 / 4e-06 Rubisco methyltransferase family protein (.1.2.3) AT2G18850 42 / 0.0009 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026538 [exp] 62 / 8e-10 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10013825 [exp] 55 / 1e-07 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10022333 [exp] 49 / 9e-06 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 48 / 2e-05 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10021783 [exp] 47 / 2e-05 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081400 [exp] 521 / 0 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.004G135700 [exp] 53 / 4e-07 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.017G066500 [exp] 44 / 0.0003 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10035757 pacid=23147675 polypeptide=Lus10035757 locus=Lus10035757.g ID=Lus10035757.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGAGGAGGCCGGCAGGGAGAGCTTCGAGCGCTTCATGAAATGGGCCGCCGAGCTCGGAATTTCCGATTCGCCTCATAGCTCCCGGTCAC CTAAAAACCTGATTCCCTGTTTGGGCCACTCTCTCGTTGTATCCAACTTCCCGGACGCCGGAGGAAGAGGTCTGGCAGCTGCCCGCCATCTCAGTAAAGG AGAATTAGTTCTCACTGTTCCGAAAGCTGCTCTCTTTACCACCAATCGTTTGTTATCAGATGATGCCAAGCTTTCCTCCGCCGTCAATGACTACCCTTCT CTCTCTCCCACCCAGGTGTTGGGAGTTTGCTTGTTGTATGAAATGGGTAAAGGGAGGAAGTCATGGTGGTATCCTTACTTGAAGCAGTTGCCTCGTGGGT ATGATACATTAGCAACTTTCAGTGAGTTCCAAAAGCAAACTCTTCAAGTTGATGATGCTGTATGGACTGCTGAAAAGGCTATAGAGACGGCTAAGATGGA ATGGACACAAGCTAAGCCACTCATGGAACAGCTTTGTTTCAAGCCTAAGTTTCAGAGCTTCAAGGCATGGACTTGGGTTTCTGCAACAATCTCGTCAAGG ACAATGCATGTATCATGGGATGAAGCTGGAACTTTGTGTCCAGTTGGAGACTTCTTCAACTATGCTGCCCCTGGGGGGGAATCATCAAGTGGGCCGAATA ACGAGTGTTCAACAAGCCGCCAATCATTTATACAGGATAGTTTTGTACCTAATGAAATAATTTCAGATCAAATAACCACAGAGAAAAGTAGCTCACTTTG TGATGCTTCTGTTGATGCTGGGTTTAATAGCCACCTTTCTGCATATTGCTTCTATGCCAGGAGAGATTATAAGAAGGGAGAGCAGGTTCTCCTGGCCTAT GGGACATACACAAATCTGGACCTTCTCGAACACTACGGGTTCTTGCTAGGCAAAAATCCAAACGACAAAGCATTTGTCCCCTTGGAACCTTGCGTGCGTT CGTTAACCTCATGGCCCCAGGACTCGATGTATATCCACGGAGACGGCAGACCATCTTTCGCATTACTCTGTGCATTGCGGTTCTACGTCAGCCCAGTGCA TCAGCGGAGATCCATTGCTCACCTTGTGTATTCCGGTTTGCAAGTTTCAGAAGTCAATGAGATATCAGCCATGCAATGGCTGTCCAAGAAGTGCGACGAG CTTCTCCAGACTTTCCCAACAACAATGGAAGAAGATGATAAGCTGATGTCAACTGTTGTTGGCAGAGTCCAAAACATGAACTGCCCTGTGGAGGTAGGGA AGTTGGCATACTCGTTGAGAAGTGAAGTCTGTGGCTTAATGGATGGGCACAGTGATGTAGTAGGTGAAGGAGAAGATGGTATTGGTGAGCTTTTGCTGTC TTCAAGGAGGACTGAAAATGCGTTAGGGAAATGGAAATTAGCAGTTGAGTGGAGGCATGGGTATAAGAAAATACTTTCGGATTGCATTTGTTATTGTAAC CAAGTGATTAAGGAGCTGAACTTGCATACAACTTGA
AA sequence Show only first row Show all	>Lus10035757 pacid=23147675 polypeptide=Lus10035757 locus=Lus10035757.g ID=Lus10035757.BGIv1.0 annot-version=v1.0 MEEEEEAGRESFERFMKWAAELGISDSPHSSRSPKNLIPCLGHSLVVSNFPDAGGRGLAAARHLSKGELVLTVPKAALFTTNRLLSDDAKLSSAVNDYPS LSPTQVLGVCLLYEMGKGRKSWWYPYLKQLPRGYDTLATFSEFQKQTLQVDDAVWTAEKAIETAKMEWTQAKPLMEQLCFKPKFQSFKAWTWVSATISSR TMHVSWDEAGTLCPVGDFFNYAAPGGESSSGPNNECSTSRQSFIQDSFVPNEIISDQITTEKSSSLCDASVDAGFNSHLSAYCFYARRDYKKGEQVLLAY GTYTNLDLLEHYGFLLGKNPNDKAFVPLEPCVRSLTSWPQDSMYIHGDGRPSFALLCALRFYVSPVHQRRSIAHLVYSGLQVSEVNEISAMQWLSKKCDE LLQTFPTTMEEDDKLMSTVVGRVQNMNCPVEVGKLAYSLRSEVCGLMDGHSDVVGEGEDGIGELLLSSRRTENALGKWKLAVEWRHGYKKILSDCICYCN QVIKELNLHTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	0	1
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	3.7	0.9150
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	5.0	0.9152
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	7.9	0.8951
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	10.6	0.9127
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	13.2	0.8845
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	14.5	0.9075
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	16.1	0.9120
AT2G24550			unknown protein		Lus10020142 [exp]	16.7	0.9082
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	20.9	0.9086
					Lus10006006 [exp]	21.2	0.9080

Compare expression of checked genes

Lus10035757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.