Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17745 662 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 480 / 6e-164 D-3-phosphoglycerate dehydrogenase (.1) AT4G34200 480 / 1e-163 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17744 172 / 9e-51 unknown protein AT1G68010 96 / 4e-21 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G14780 92 / 9e-20 FDH formate dehydrogenase (.1) AT1G79870 82 / 6e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 81 / 1e-16 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G72190 75 / 3e-14 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 70 / 1e-12 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019818 [exp] 518 / 8e-179 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 511 / 1e-175 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 505 / 1e-173 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10037333 [exp] 287 / 1e-94 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037334 [exp] 246 / 2e-77 AT1G17745 246 / 1e-77 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10019793 [exp] 94 / 2e-20 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 94 / 8e-20 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10037552 [exp] 89 / 6e-19 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10032150 [exp] 85 / 2e-17 AT5G14780 618 / 0.0 formate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122700 [exp] 665 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 660 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 518 / 7e-178 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 513 / 4e-176 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 507 / 3e-174 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 486 / 4e-166 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.004G175800 [exp] 94 / 3e-20 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 87 / 3e-18 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.003G052700 [exp] 77 / 4e-15 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G119000 [exp] 77 / 5e-15 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035758 pacid=23147625 polypeptide=Lus10035758 locus=Lus10035758.g ID=Lus10035758.BGIv1.0 annot-version=v1.0 ATGGCGTCTTATTCTTCATCCACCAAATCCATCCTCTCCCCTTCTTTCCTCTCCCTTCCTAATTCCTCCTCCGCCGACTCCCTCCCTCCGCCGCACCCCT CGCTCCTATCATTCCTCCCCAACTCCTCCACCGCAGTATCCCTCAAGATCTCCGATCGACACTCCCGGCAGCGCCGGATCCGCTCCCTGTGGTCCATCAC CACCAACGCCGTCAACACCACTTCCTCACCTCCTTCCTCCTCCTCCACCGCTCCCGTCCAGACCGGGCCCACAATCCTGGTCTCCGAGAAGCTCGGAGAG GCCGGATTGAACCTCCTGCGCGAGTTCGGGAACGTGGACTGCTCGTACGACCTCTCGCCCGAGCAGCTACGGAGTAAGATCTCGTCATGCGACGCTCTGA TTGTGAGGAGCGGGACCAAGGTCACGCGGGAGGTGTTCGAGGCGTCCAAGGGGAGGCTGAAGGTTGTTGGAAGGGCCGGAGTTGGGATCGACAATGTGGA TCTGCAGGCCGCCACCGCATTCGGGTGCCTTGTGGTGAATGCTCCGACCGCCAATACCGTCGCCGCGGCGGAGCATGGTATCGCGCTTATCGCCGCGATG GCGCGGAATGTTGCACAGGCCGACGCCTCCGTCAAATCCGGAAAATGGCAACGGACCAAGTACGTAGGAGTGTCAATGGTGGGCAAAACACTAGCCGTGA TGGGATTCGGCAAAGTCGGGTCGGAAGTCGCCCGGAGGGCAAAAGGTCTGGGAATGCACGTTATCTCCCACGACCCATACGCACCGGCAGACAGAGCCCG TGCCATGGGAGTGGAACTAGTCTCCTTCGACCAAGCCATCTCCACCGCCGACTTCATCTCCCTCCACATGCCCCTAACCCCGACCACCAAGGAAATGCTC AACGACGAGACCTTCGCCAAGATGAAGGACGGGGTCCGCATCGTCAATGTAGCCAGGGGAGGCGTCATCGACGAGGAAGCACTCGTCCGCGCCCTCGACT CCGGCAAGGTCGCCCAGGCCGCGCTGGACGTCTTCGGAGAGGAGCCGCCTTCCAAAGACGCCGACCTCCCACCGTTCATAACCCTAGGCGAGAAGCTCGG GAGACTGGCGGTACAATTAGCATCCGGAGGCGGAGGGATTCAATCTGTTAAGGTGGTGTACAGATCGGGGAGGAGCCCCGACGATCTGGACACCAGGCTA CTCCGGGCAATGATAACGAAAGGGATAATCGAGCCAATATCGTCGGAGTACGTAAACCTGGTGAATGCAGATTTCATAGCGAAGCAGAGGGGGTTGAGGA TAAGCGAGGAAAGAGTGGTGGGGGGGGGGGCGGAGAGTGGTGGTGGAAGGGTCGCCGGAGATGCCAGTGCAGTCTATAGAGATGTAGTATCCGAGACTTC TTTGGTGCAAATATCGAATGTGGATTCGAAATTTGCGAGCGCAGTGGTGGCGGCAGAGGGAGGGGAGATAGCGATAGAAGGTAGAGTGAAGTACGGAGTG CCGCATCTGACAAAAGTAGGAGGGTTCGAGGTAGACGTAAGCCTAGAAGGGAATCTGATACTGTGTAGGCAGGTGGATCAGCCAGGGATGATTGGGGTGG TTGGGAATATACTTGGGGATGATAATGTGAATGTGAGCTTCATGAGTGTGGGGAGGATGGCGAGGAAGAAGCAAGCGATAATGGCGATCGGAGTCGATGA AGAGCCGAGAGAGGAGACCCTGGGTAAGATTGGTCAAGTTTCCGCTGTTGAAGAGTTCGTCTTCCTCAAGTTGTAG
AA sequence Show only first row Show all	>Lus10035758 pacid=23147625 polypeptide=Lus10035758 locus=Lus10035758.g ID=Lus10035758.BGIv1.0 annot-version=v1.0 MASYSSSTKSILSPSFLSLPNSSSADSLPPPHPSLLSFLPNSSTAVSLKISDRHSRQRRIRSLWSITTNAVNTTSSPPSSSSTAPVQTGPTILVSEKLGE AGLNLLREFGNVDCSYDLSPEQLRSKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATAFGCLVVNAPTANTVAAAEHGIALIAAM ARNVAQADASVKSGKWQRTKYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMHVISHDPYAPADRARAMGVELVSFDQAISTADFISLHMPLTPTTKEML NDETFAKMKDGVRIVNVARGGVIDEEALVRALDSGKVAQAALDVFGEEPPSKDADLPPFITLGEKLGRLAVQLASGGGGIQSVKVVYRSGRSPDDLDTRL LRAMITKGIIEPISSEYVNLVNADFIAKQRGLRISEERVVGGGAESGGGRVAGDASAVYRDVVSETSLVQISNVDSKFASAVVAAEGGEIAIEGRVKYGV PHLTKVGGFEVDVSLEGNLILCRQVDQPGMIGVVGNILGDDNVNVSFMSVGRMARKKQAIMAIGVDEEPREETLGKIGQVSAVEEFVFLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	0	1
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	1.4	0.8937
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	2.0	0.8751
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	9.3	0.8402
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	13.6	0.8384
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	14.0	0.8357
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	15.0	0.8056
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	15.9	0.7968
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	17.7	0.8332
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	18.2	0.8087
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	20.6	0.8181

Compare expression of checked genes

Lus10035758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.