Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 74 / 7e-15 unknown protein AT1G30140 58 / 1e-09 unknown protein AT4G02210 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037335 [exp] 641 / 0 AT5G27260 69 / 7e-13 unknown protein Lus10032348 [exp] 509 / 0 AT5G27260 52 / 2e-07 unknown protein Lus10012077 [exp] 298 / 3e-100 AT5G27260 50 / 5e-07 unknown protein Lus10014160 [exp] 229 / 1e-73 ND 47 / 6e-06 Lus10024751 [exp] 163 / 2e-49 AT1G30140 54 / 4e-09 unknown protein Lus10019607 [exp] 157 / 3e-46 ND / Lus10007175 [exp] 142 / 1e-39 AT5G27260 67 / 2e-12 unknown protein Lus10000529 [exp] 136 / 7e-39 ND 37 / 0.005 Lus10022379 [exp] 99 / 2e-23 AT5G27260 74 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163248 [exp] 52 / 2e-07 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 51 / 3e-07 AT4G02550 77 / 7e-16 unknown protein Potri.011G088750 [exp] 48 / 3e-06 AT4G02550 79 / 3e-17 unknown protein Potri.001G157750 [exp] 47 / 5e-06 AT4G02550 73 / 6e-15 unknown protein Potri.006G196716 [exp] 47 / 6e-06 AT4G02550 69 / 2e-13 unknown protein Potri.002G206500 [exp] 47 / 6e-06 AT4G02550 88 / 4e-20 unknown protein Potri.015G008050 [exp] 47 / 7e-06 AT4G02550 77 / 2e-16 unknown protein Potri.009G022650 [exp] 47 / 1e-05 AT4G02550 79 / 7e-17 unknown protein Potri.003G047151 [exp] 46 / 1e-05 AT4G02550 69 / 3e-13 unknown protein Potri.012G061366 [exp] 46 / 1e-05 AT4G02550 71 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035759 pacid=23147347 polypeptide=Lus10035759 locus=Lus10035759.g ID=Lus10035759.BGIv1.0 annot-version=v1.0 ATGGCAAGAAAGAGGAAGGATGAGGTTGATGGCGAATCAGGACGAAAGTACTTCCCCTGGACTGACGAGTTAGATCAAATGCTTGTTAAGTGCATCATCA CTCTAGTTGAGAATAAGAAGATCGATGCAAAGGGAAAGTTCCTCTTTGGCACTTACAGGGAACTAGAACGGATGATGGAAGAGGAGAAACCAGGTTGTGG AGTGAAGGCCGACCCCAACATCATTTCTAGGTGCAAAACCCTAAAGAGAAAATTCTTAGCTGTGCAGGAGTTACGAGGTTTAAGTGGTTCAGGTTGGGAT GATATGAATAAGATGGTTATTATTGAGGACAAGGCTTATGCCGATTACGTTGAGAAACATAGTCATTGTGTAAAGCTGAACCGGGTTCCTTTTCGATGCT ATGATGGTTTAGAAGTTGTGTTCGGGAAGGTTCGTGCTACTGGTGGAGGGGCTGTTGGGTTGGAAGAATTGGAGCAGGCATGCCCTAAGATTGAGGTACC AAAGATAATTATGTTGGGCTGGAAGAATTCGGATGATGGGGTTCACGTCGATCAAACAGATACAAGTGAGCAGCATAACGAAGAACATGACACAAAACAC GACACAGTCAAAGATAACAACCTCAATGACCAAACAGAGTTTGTTGTACCGGATGAAGAACACAACCTTCCAACACCTTCTGAGAAGGCCGCTCAATCCG AAGCCACCAGCCACCTAAAGAGGGTTCGTCGATCTAGTAATGAATTCGGGGGCGAGATGTGTGAGCTGAAGCTAATGATTAAGGAGACAATCAATACGCT TCGGTCAATGTTGGAGGAATCTGATACCATCCACAAGCAGAGGAACATGCTGTACAAAGAGCTTGGAAAAATCGAAGGTCTTACGGAGGATCAGGTAATG GATGCGACGTTAAGCCTTGGAAAGGACGACAAAATGCTACAAATATTCTTCAACATGGATTCTGATCATGCGCGGAAACACTTCATCTTACGTCTACTTC GTTCAAGTTGA
AA sequence Show only first row Show all	>Lus10035759 pacid=23147347 polypeptide=Lus10035759 locus=Lus10035759.g ID=Lus10035759.BGIv1.0 annot-version=v1.0 MARKRKDEVDGESGRKYFPWTDELDQMLVKCIITLVENKKIDAKGKFLFGTYRELERMMEEEKPGCGVKADPNIISRCKTLKRKFLAVQELRGLSGSGWD DMNKMVIIEDKAYADYVEKHSHCVKLNRVPFRCYDGLEVVFGKVRATGGGAVGLEELEQACPKIEVPKIIMLGWKNSDDGVHVDQTDTSEQHNEEHDTKH DTVKDNNLNDQTEFVVPDEEHNLPTPSEKAAQSEATSHLKRVRRSSNEFGGEMCELKLMIKETINTLRSMLEESDTIHKQRNMLYKELGKIEGLTEDQVM DATLSLGKDDKMLQIFFNMDSDHARKHFILRLLRSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10035759 [exp]	0	1
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	1.0	0.8424
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	1.4	0.7772
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	9.8	0.7359
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	11.0	0.7119
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	11.4	0.7715
AT1G48170			unknown protein		Lus10022783 [exp]	13.7	0.7214
					Lus10019266 [exp]	16.1	0.6977
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	16.7	0.7245
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	17.7	0.7658
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	17.9	0.7568

Compare expression of checked genes

Lus10035759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.