Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14030 808 / 0 SBP1 selenium-binding protein 1 (.1.2) AT4G14040 797 / 0 SBP2, EDA38 EMBRYO SAC DEVELOPMENT ARREST 38, selenium-binding protein 2 (.1) AT3G23800 774 / 0 SBP3 selenium-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037336 [exp] 989 / 0 AT4G14030 815 / 0.0 selenium-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321600 [exp] 872 / 0 AT4G14030 826 / 0.0 selenium-binding protein 1 (.1.2) Potri.017G060000 [exp] 862 / 0 AT4G14030 806 / 0.0 selenium-binding protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF05694 [flax] [poplar] SBP56 56kDa selenium binding protein (SBP56)
Representative CDS sequence Show only first row Show all	>Lus10035760 pacid=23147567 polypeptide=Lus10035760 locus=Lus10035760.g ID=Lus10035760.BGIv1.0 annot-version=v1.0 ATGGGAACAGAGGTTCTAACAACGAAGAGCAATGGCTCCGCCTGCTGCACCCACAACAAAGGACCTGGTTATGCTTCCCCTTTGCAAGCCATGTCCGGTC CCAAGGAGTCTCTCCTTTACACCACTTGCGTCTATACTGGAACTGAAATTCAGAAGCCTGATTTCCTAGCTACAGTGGATGTAGACCCAAATTCTCCAAC TTATTCACAAGTTATCCACAGGCTACCGATGCCCAATTTAGGGGATGAACTCCATCACTCTGGATGGAATTCCTGCAGCTCTTGCCATGGGGACCCTTCT GCTTCCCGCCGCTTCCTTGTCCTCCCTTCATTAGTTTCTGGCCGCATATATGCAGTTGATACTCTAAAGGATCCAAGGGCGCCATCTCTACACAAGATGG TAGAGGGTGCTGACATTGTATCAAAGACAGGATTGGCATATCCACACACCGCTCATTGCCTTGGCTCTGGCGATATCATGGTCTCTTGTCTTGGAGATAA AGATGGCAATGCTGAGGGGCTCGGGTTTCTTCTCCTCGATTCCGAGTTCAATGTCAAAGGAAGGTGGGAAAAGCAAGGCCATTCTCCTTTGTTTGGCTAC GATTTCTGGTACCAGCCGCGGCACAACACCATGATAAGCACATCATGGGGAGCTCCTGCTGCATTTACCAAAGGCTTCGACCTGCAACATGTGTCGGATG GCCTTTACGGAAGGCATCTATATGTTTACAATTGGTCGACCGGCGAACTTAAACAGCAGCTGGATCTAGGCAACACTGGCCTCCTACCATTGGAGATAAG GTTCCTGCATGATCCTTCTAAGGACACAGGGTTCGTTGGTTGTGCCTTGTCAAGTAACATGGTGAGGTTTTTCAGGAATGCTGATGACACCTGGAATCAT GAGCTGGCAATATCGGTGAAGCCCTTGAAGGTGAAGAACTGGATTCTCCCAGAGATGCCAGGACTGATAACAGATTTCCTGCTGTCTCTCGATGATCGGT TTCTGTACTTCGTCAACTGGCTTCATGGCGACATCCGACAGTACAACATCGAGGACGTGAAGAATCCGGTGCTGACAGGACAGGTATGGGTTGGGGGACT GTTGCAGAAAGGAAGCCCCATAGTTGTTGAGAATGAGGATGGTAGCACCTGGCAAGCGGATGTTCCAGAGATGCAGGGGAAGCGGCTGAGAGGAGGGCCA CAGATGATTCAGCTAAGCCTAGACGGGAAGAGACTATACGTGACGAACTCACTCTTCAGCGCCTGGGATAAGCAGTTCTACCCGGAAATTGTGGAGAAAG GGTCTCACATGCTGCAGATTGATGTCGACACAGAGAAAGGTGGACTGGGAATAAACCCAAACTTCTTTGTGGACTTTGGAGATGAACCTGGTGGTCCGTC GTTGGCTCATGAGATGAGATATCCAGGTGGTGACTGCACCTCAGACATATGGATCTAA
AA sequence Show only first row Show all	>Lus10035760 pacid=23147567 polypeptide=Lus10035760 locus=Lus10035760.g ID=Lus10035760.BGIv1.0 annot-version=v1.0 MGTEVLTTKSNGSACCTHNKGPGYASPLQAMSGPKESLLYTTCVYTGTEIQKPDFLATVDVDPNSPTYSQVIHRLPMPNLGDELHHSGWNSCSSCHGDPS ASRRFLVLPSLVSGRIYAVDTLKDPRAPSLHKMVEGADIVSKTGLAYPHTAHCLGSGDIMVSCLGDKDGNAEGLGFLLLDSEFNVKGRWEKQGHSPLFGY DFWYQPRHNTMISTSWGAPAAFTKGFDLQHVSDGLYGRHLYVYNWSTGELKQQLDLGNTGLLPLEIRFLHDPSKDTGFVGCALSSNMVRFFRNADDTWNH ELAISVKPLKVKNWILPEMPGLITDFLLSLDDRFLYFVNWLHGDIRQYNIEDVKNPVLTGQVWVGGLLQKGSPIVVENEDGSTWQADVPEMQGKRLRGGP QMIQLSLDGKRLYVTNSLFSAWDKQFYPEIVEKGSHMLQIDVDTEKGGLGINPNFFVDFGDEPGGPSLAHEMRYPGGDCTSDIWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	0	1
AT2G33250			unknown protein		Lus10023703 [exp]	2.4	0.8281
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	2.4	0.8382
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	2.8	0.8194
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	3.5	0.8346
AT2G44870			unknown protein		Lus10020395 [exp]	6.7	0.8056
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	8.8	0.8050
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	11.5	0.7949
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	16.7	0.7818
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	19.8	0.7718
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	23.5	0.7497

Compare expression of checked genes

Lus10035760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.