Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55915 155 / 2e-45 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037337 [exp] 163 / 3e-50 AT1G55915 214 / 5e-68 zinc ion binding (.1) Lus10016607 [exp] 134 / 4e-37 AT1G55915 431 / 4e-150 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009700 [exp] 225 / 3e-73 AT1G55915 314 / 2e-105 zinc ion binding (.1) Potri.010G249400 [exp] 141 / 4e-41 AT1G55915 157 / 3e-45 zinc ion binding (.1) Potri.011G092900 [exp] 133 / 1e-36 AT1G55915 429 / 5e-149 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035762 pacid=23147415 polypeptide=Lus10035762 locus=Lus10035762.g ID=Lus10035762.BGIv1.0 annot-version=v1.0 ATGGCTAAAGGGATTACTGGAACTGGTGAAGGGTTTGATCGTCCAGGTAGACGCTTGGGAGGGTACTTCAGTCAACCCCCTTTTCCGATCCTCCGCCAGT CTGCACTGGCTGCTGCCGAGAACAGAGCTAGACGGGGCACTTTACTGCCATCGGGTCCTCAACGTCTGGGTGGTGATGACGATATTAAGACTGCACTCAG CCCCATACAAGCAGCTGCTATGGCTGCAGAAAGGAGATTGCATGATGATGTATGGTGTGGTTCCAAATTGTCTGGCACCACCACCACCATTAACATTGAA GAACAGGTTGAACTTAGGCCTGGTAATTCCTCTCGTGGTTCCTCGAGTCACCAGGAGCTTTTCCGTGGCCAAGGAGGATGGCAATGTGATGATTGTACTT TGTTGAATCAGCCAAAATCGAATGTGGTTGGTTTACCGAGTCTGAATCATTCTGCTTGTCATTCATTACAGCAAATGTCTGTGCGGTGTGAAGCCTGCGA GACTCCCAGACGAAAAGATGGCGCGAAGTTGAAGATATGGTGTTGCAAGTTTTGCACTCTGGAGAACAGTTCAGAGGTAGAGAGGTGCTTGGCTTGTGAG GAATGGAGATATTGCCCGCCCGTGTCCGCTCAGTATGGACAGCATCACCATCACTATGCCTAA
AA sequence Show only first row Show all	>Lus10035762 pacid=23147415 polypeptide=Lus10035762 locus=Lus10035762.g ID=Lus10035762.BGIv1.0 annot-version=v1.0 MAKGITGTGEGFDRPGRRLGGYFSQPPFPILRQSALAAAENRARRGTLLPSGPQRLGGDDDIKTALSPIQAAAMAAERRLHDDVWCGSKLSGTTTTINIE EQVELRPGNSSRGSSSHQELFRGQGGWQCDDCTLLNQPKSNVVGLPSLNHSACHSLQQMSVRCEACETPRRKDGAKLKIWCCKFCTLENSSEVERCLACE EWRYCPPVSAQYGQHHHHYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55915			zinc ion binding (.1)		Lus10035762 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	7.7	0.8259
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	10.0	0.8390
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	15.0	0.8063
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	17.1	0.8090
					Lus10040920 [exp]	18.7	0.8250
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10024638 [exp]	19.9	0.8101
AT5G41560			unknown protein		Lus10028758 [exp]	20.2	0.8003
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	25.9	0.7874
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	26.0	0.8106
AT1G52320			unknown protein		Lus10035887 [exp]	26.6	0.8029

Compare expression of checked genes

Lus10035762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.