Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 488 / 3e-174 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 474 / 1e-168 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G18350 276 / 2e-91 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 276 / 2e-91 ATMKK9 MAP kinase kinase 9 (.1) AT3G06230 230 / 9e-74 ATMKK8 MAP kinase kinase 8 (.1) AT1G32320 211 / 6e-66 ATMKK10 MAP kinase kinase 10 (.1) AT4G29810 211 / 2e-65 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G56580 199 / 7e-61 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G26070 194 / 4e-59 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G40440 160 / 1e-44 ATMKK3 mitogen-activated protein kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037339 [exp] 313 / 3e-107 AT1G51660 226 / 4e-73 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 234 / 6e-76 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10012938 [exp] 199 / 7e-61 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 191 / 4e-57 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10034986 [exp] 187 / 5e-56 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10011945 [exp] 173 / 9e-50 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10040128 [exp] 160 / 1e-48 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10003745 [exp] 150 / 1e-42 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10037340 [exp] 140 / 7e-42 AT3G21220 95 / 4e-25 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009800 [exp] 516 / 0 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 513 / 0 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 301 / 3e-101 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 289 / 1e-96 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.010G049500 [exp] 226 / 1e-71 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 222 / 2e-70 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.018G068500 [exp] 209 / 1e-64 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.006G146500 [exp] 202 / 6e-62 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G050800 [exp] 201 / 2e-61 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.001G345500 [exp] 155 / 1e-42 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035764 pacid=23147615 polypeptide=Lus10035764 locus=Lus10035764.g ID=Lus10035764.BGIv1.0 annot-version=v1.0 ATGAAACCTATTCACTCCCCTCCGGGGACCTCCGTACAATCCGTCTCCTCTCCGTCTTCATCTAATCGGAAGCCTCGCAAGCGTCCTGACCTCATCCTAC CTCTGCCGCCTCGTGAGCCCAAGATCGCCGTTCCTCTCCCTCTCCCTCCCAACTCCGCCCCTTCCGCCACCCACCCGCACCCCGCTCACCAGGCCATCAG CTTCTCCGAGCTCGATCGGATGAATAGGATTGGCAGCGGCAGCGGCGGCACCGTCTACAAGGTCGTCCACCGACTCACCGGACGCGTCTTCGCCCTCAAG GTCATTTACGGTAACCACGAGGACTCCGTACGCAACCAGATCTGCCGCGAGATCAAGATTCTCCGGGATGTCAACCACTCTAATGTTGTCAAGTGTCATG ACATGTATGACGCCAACGGTGAGATCCAGGTTCTTCTTGAGTTCCTCGACGGTGGATCCCTCGAAGGAGCTCACATAGCTAACGAGTCTCATTTGTCTGA CGTGGCTCGTCAGATGTTGAGCGGAATTGCGTACCTTCACCGCCGGAAGATCGTCCACCGCGACATCAAGCCTTCCAATCTATTGATCAACTCCAACAAG CATGTTAAGATTGCCGATTTCGGGGTGAGCAGGATCCTCGCTCAGACTATGGACCCTTGCAACTCTTCCGTCGGAACCATCGCTTACATGAGCCCCGAGA GGATCAACACCGACTTGAATCATGGCCAGTACGATGGTTACGCTGGGGACATTTGGAGCTTGGGAGTCAGCATCTTGGAGTTTTACTTGGGGAGATTTCC ATTTGCAGTTGGGAGGCAGGGCGATTGGGCGAGCTTGATGTGTGCTATATGTATGTCGCAGCCACCAGAGGCTCCGGCAACTGCTTCCAGGGAGTTTAGA GATTTCATCGCTTGTTGTTTGCAGAGGGAACCAGGGAGGAGATGGACTGCTGTGCAGTTGTTGAATCATCCCTTCATAGTGAGGGGCAATGGAGCTCCAA AAGAAGGGAGCCAGAATCTGCACCAATTACTGCCTCCTCCACGCCCACTCTCATCATAG
AA sequence Show only first row Show all	>Lus10035764 pacid=23147615 polypeptide=Lus10035764 locus=Lus10035764.g ID=Lus10035764.BGIv1.0 annot-version=v1.0 MKPIHSPPGTSVQSVSSPSSSNRKPRKRPDLILPLPPREPKIAVPLPLPPNSAPSATHPHPAHQAISFSELDRMNRIGSGSGGTVYKVVHRLTGRVFALK VIYGNHEDSVRNQICREIKILRDVNHSNVVKCHDMYDANGEIQVLLEFLDGGSLEGAHIANESHLSDVARQMLSGIAYLHRRKIVHRDIKPSNLLINSNK HVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGQYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPATASREFR DFIACCLQREPGRRWTAVQLLNHPFIVRGNGAPKEGSQNLHQLLPPPRPLSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	0	1
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	1.4	0.8871
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	1.4	0.8857
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	1.7	0.8820
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	3.5	0.8386
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	4.0	0.8191
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	6.3	0.8438
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	7.0	0.8194
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	7.3	0.7970
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	8.7	0.8387
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	9.4	0.7925

Compare expression of checked genes

Lus10035764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.