Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13750 593 / 0 ZIFL1 zinc induced facilitator-like 1 (.1.2.3) AT5G13740 530 / 0 ZIF1 zinc induced facilitator 1 (.1) AT3G43790 525 / 0 ZIFL2 zinc induced facilitator-like 2 (.1.2.3) AT5G13940 80 / 2e-15 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037341 [exp] 867 / 0 AT5G13750 640 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034847 [exp] 684 / 0 AT5G13750 664 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033392 [exp] 677 / 0 AT5G13750 659 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033391 [exp] 672 / 0 AT5G13750 642 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034794 [exp] 652 / 0 AT5G13750 645 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033338 [exp] 645 / 0 AT5G13750 646 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034846 [exp] 599 / 0 AT5G13750 600 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037425 [exp] 544 / 0 AT3G43790 687 / 0.0 zinc induced facilitator-like 2 (.1.2.3) Lus10000256 [exp] 316 / 1e-105 AT5G13750 318 / 3e-108 zinc induced facilitator-like 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010600 [exp] 632 / 0 AT5G13750 630 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.016G024400 [exp] 587 / 0 AT5G13750 588 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.006G026200 [exp] 568 / 0 AT5G13750 572 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.010G248401 [exp] 175 / 7e-52 AT5G13750 144 / 2e-41 zinc induced facilitator-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10035766 pacid=23147388 polypeptide=Lus10035766 locus=Lus10035766.g ID=Lus10035766.BGIv1.0 annot-version=v1.0 ATGGAAACACAAGATGAAGAGCATGATGTGCCATTGTTGTTGAAGAAGAAGAAACAGTGCAATTACTATGAGGATTGTCCAGGTTGTAAAGTTGACCAAC TCAAAGAGTTGAAGACTGGTTTGCCTATCAAAGAGTTCCTTTCAATATGGACTGTTGTTCTTTCTACTGCTCTTCCCATATCTTCTCTTTTCCCCTATCT CTACTTCATGGTGAGCATTTACCAAGGGACTTTTGGTTATAAAGTTGAAAGCTTTCCCCTGTTTAGAAAATGGGTTTATGTTGAGGATTTTGAACTATTT CAGATAAGGGATTTCAAGATTGCAGAAAAGGAGGAAGACATAGGTTACTATGCCGGCTATGTTGGAGCATCATTTATGCTTGGGAGAGCTTTGACATCAG TGTTATGGGGGCTGGTTGCTGATCGCTATGGTAGAAAGCCTGTTATCCTCGTAGGGACTTCATCAGTGGTCATTTTCAGCAGTCTCTTTGGCCTCAGTGT CAACTTCTGGATGGCTGTTAGCACAAGATTCTTACTTGGCTGCATGAATGGTTTACTTGGTCCGATCAAGGCCTATGCAACTGAAATCTTCAGAGATGAA CATCAAGCTTTGGGTTTATCCACGATTACAACAGCATGGGGTATTGGATTGATCATTGGTCCAGCTATAGGAGGGTTCCTAGCCCAGCCAGCAGAGAAAT ATCCAACTTTGTTCTCCCAGGAATCCTTATTTGGCAGATTACCTTACTTCTTGCCATGCTTTGCTATATCGATCATTGCTTTCGGAGTAACCATTGCTTC GTGCTGGCTCCCGGTATCTCTTTTCTACAAGGAAACGTTGCATATCCACAAGGAAAAGATGGCACCACCAGGTGACGATGATGAAAAGAAATCACTGATT GAACAGAAGAAACCAGATGGAAAAAGCCTGCTGACAAATTGGCCTCTAATGTCAGCTATCATGGTTTACTGTATCTTCTCACTTCATGACATGGCCTATA CAGAGACGCAGTTAGTTTTGTGTAGCCAAGTTGATGAATTGATGGCTCTGGTGTTGGCGCAGATATTTTCGTTGTGGGCAGTTAGCCCCAGGAAATTAGG TGGACTTGAATATTCCACAGAGAATGTTGGTGAAGTGCTGGCAGTGACAGGATTTGGATTGCTTATATTCCAAATTGTTCTATACCCATATGCCGAAAGG CTTCTTGGACCCATAATGGTCAGCCGTCTTGCTGGTGTGTTATCCATTCCATTGTTGGCAACCTACCCTTTTCTGTCAAAGTTATCCGGCTTCACTCTAA GTGTGGTGATAAACTGCGCATCGGTGTTGAAGAATCTGCTATCGGTGTCAATAGTGACGGGGTTGTTTATTCTGCAAAACAATGCAGTGGAGCAACATCA AAGAGGAGCAGCAAATGGGATTGCAATGACATCAATGTCACTCTTTAAAGCAGTTGGTCCTGCTGGTGGCGGTACTCTGTTTTCTTGGGCAGAAAAGCGT CCGGATGCTGCCTTTCTTCCAGGAACTCAAATGGTGTTCTTCGTGCTAAACGTGGTGGAGGCAATCGGGGTTCTGTTCACATTCAGGCCATTCCTAGTCC ATCCAGGCTCCTAA
AA sequence Show only first row Show all	>Lus10035766 pacid=23147388 polypeptide=Lus10035766 locus=Lus10035766.g ID=Lus10035766.BGIv1.0 annot-version=v1.0 METQDEEHDVPLLLKKKKQCNYYEDCPGCKVDQLKELKTGLPIKEFLSIWTVVLSTALPISSLFPYLYFMVSIYQGTFGYKVESFPLFRKWVYVEDFELF QIRDFKIAEKEEDIGYYAGYVGASFMLGRALTSVLWGLVADRYGRKPVILVGTSSVVIFSSLFGLSVNFWMAVSTRFLLGCMNGLLGPIKAYATEIFRDE HQALGLSTITTAWGIGLIIGPAIGGFLAQPAEKYPTLFSQESLFGRLPYFLPCFAISIIAFGVTIASCWLPVSLFYKETLHIHKEKMAPPGDDDEKKSLI EQKKPDGKSLLTNWPLMSAIMVYCIFSLHDMAYTETQLVLCSQVDELMALVLAQIFSLWAVSPRKLGGLEYSTENVGEVLAVTGFGLLIFQIVLYPYAER LLGPIMVSRLAGVLSIPLLATYPFLSKLSGFTLSVVINCASVLKNLLSVSIVTGLFILQNNAVEQHQRGAANGIAMTSMSLFKAVGPAGGGTLFSWAEKR PDAAFLPGTQMVFFVLNVVEAIGVLFTFRPFLVHPGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10035766 [exp]	0	1
AT2G23770			protein kinase family protein ...		Lus10041323 [exp]	3.5	0.7012
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	4.2	0.7385
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10003303 [exp]	4.2	0.6830
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10009044 [exp]	8.1	0.7519
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	8.1	0.7188
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	16.5	0.6609
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006120 [exp]	23.6	0.6752
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	35.9	0.6784
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	49.1	0.5926
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	52.2	0.6674

Compare expression of checked genes

Lus10035766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.