Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 301 / 3e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 285 / 7e-98 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 63 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027997 [exp] 219 / 1e-71 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004436 [exp] 201 / 9e-65 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10000665 [exp] 170 / 4e-52 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 170 / 4e-52 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 136 / 2e-37 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201400 [exp] 318 / 6e-111 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 248 / 2e-83 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 78 / 6e-18 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 67 / 7e-13 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10035767 pacid=23147497 polypeptide=Lus10035767 locus=Lus10035767.g ID=Lus10035767.BGIv1.0 annot-version=v1.0 ATGTCAGGAACCCAGTGCTGTGAGAATCCACCGGCGTTGAACCCATCTAGCGGATCTGGCCATTTGGAGAAATTCGGCGGCCTTGACTCTTACGTCTGTG GCTCTCCGGACTCCAAGTCCGTCGTCATCCTTATCTCCGATGTCTTTGGTTACGAAGCTCCGAACTTGAGGCATCTAGCAGACAAGGTCGCAGCTGCTGG ATACTTTGTGGTGGTTCCTGATTTCTTCTATGGAGACCCTTACGTTCCTGATAATGCAGAAAGGGGGATTCATGTTTGGATAAAAGATCATGGAGCGGCC AAAGGATTTGAAGATGCTAAGCCTGTGGTTGAAAGCCTCAAGAGTAAAGGTGCTTCTGCAATTGGGGCTGCGGGTTTTTGCTGGGGCGCCAAGGTTGTGG CTGAACTTGCGAAAGGCAGCTCCATAAGTGCTGGTGTGATGTTGCATCCTTCATTTGTTACAGTAGATGATATAAAAGAAGTGAAGGTCCCCCTTGCTGT TCTGGGAGCGGAGATCGACCAGATGTCTCCTCCAACTCTATTGAAACAGTTTGAGGAGGTTGATGGGTTTGTGAAGATCTTTCCTGGAGTTTCGCATGGA TGGACTGTGAGGTACAATGATGAAGACAAAGCAGCAGTGAAGGCAGCGGAGGAGGCTCACAATGATATGCTGGAGTGGTTTGCCAAGTACGTCAAGTGA
AA sequence Show only first row Show all	>Lus10035767 pacid=23147497 polypeptide=Lus10035767 locus=Lus10035767.g ID=Lus10035767.BGIv1.0 annot-version=v1.0 MSGTQCCENPPALNPSSGSGHLEKFGGLDSYVCGSPDSKSVVILISDVFGYEAPNLRHLADKVAAAGYFVVVPDFFYGDPYVPDNAERGIHVWIKDHGAA KGFEDAKPVVESLKSKGASAIGAAGFCWGAKVVAELAKGSSISAGVMLHPSFVTVDDIKEVKVPLAVLGAEIDQMSPPTLLKQFEEVDGFVKIFPGVSHG WTVRYNDEDKAAVKAAEEAHNDMLEWFAKYVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	1.4	0.9129
AT3G55760			unknown protein		Lus10021897 [exp]	5.7	0.8815
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023778 [exp]	6.2	0.8636
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10042418 [exp]	7.1	0.8613
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	7.9	0.8772
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	8.8	0.8647
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	9.6	0.8733
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	10.2	0.8731
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	11.0	0.8644
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	11.4	0.8654

Compare expression of checked genes

Lus10035767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.