Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09660 317 / 2e-108 RNA-binding KH domain-containing protein (.1.2) AT4G26480 219 / 3e-70 RNA-binding KH domain-containing protein (.1) AT2G38610 216 / 6e-69 RNA-binding KH domain-containing protein (.1.2) AT3G08620 211 / 3e-67 RNA-binding KH domain-containing protein (.1) AT5G56140 206 / 1e-64 RNA-binding KH domain-containing protein (.1) AT5G51300 104 / 5e-25 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037344 [exp] 503 / 0 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 229 / 4e-74 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 228 / 9e-74 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 211 / 1e-66 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 199 / 2e-62 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 199 / 2e-62 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 189 / 4e-59 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 107 / 1e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225900 [exp] 441 / 2e-157 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 429 / 4e-153 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 233 / 7e-76 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 228 / 8e-74 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 225 / 1e-72 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.006G111400 [exp] 224 / 2e-72 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.001G471000 [exp] 224 / 5e-72 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.016G140800 [exp] 222 / 2e-71 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 108 / 5e-26 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 107 / 7e-26 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035768 pacid=23147598 polypeptide=Lus10035768 locus=Lus10035768.g ID=Lus10035768.BGIv1.0 annot-version=v1.0 ATGGGAGAGCGAATCCCACCTGGGAGTTTTTTCCAATACCCTCCTTCTGGTATTCATCATGCTTCTCCTCACAGAGCCACTTCTTTTCCTTCAGATCGTG AGAGATACTTGGCCGAACTACTAGCAGAGAGGGAAAAGCTGGGACCATTTATACAAGTACTTCCATATTGCAGCATGCTTCTTAATCAAGAGATCAGACG TGTATCAAGTTTCGGTCAGGGTTTTGGAGAGCATGAAAGATATGAGCATGATAGTCCATTTAGATCATTAGGTCAACATCCTAATGGAAGGACAATGGAT TTGGACGCTTGGTCTGCTATGCAAACAGAGGAAAATGGGAATCTCCAGAAAATGGCTTCATTACAAGCCGCTTCAATTGGTTGGCCTGCTGTCCCAGGAA TTCCAACCACTCCTGTTGTCAAGAGAGTAATTAGACTTGATGTTCCAGTAGACAAATTTCCCAATTACAACTTTGTTGGGCGGATATTGGGACCTCGTGG GAACTCCTTGAAAAGAGTGGAAGCCTTGACCGAATGTAGAGTGTATATAAGAGGCAAGGGCTCTGTAAAGGATTCTCTGAAGGAAGAGAAATTAAAAGAT AAACCAGGGTATGAGCACCTCAATGAGCCACTTCATGTGTTGGTGGAGGCGGAATTTCCAGAGAACATTATAAATGCTCGATTAGATCACGCAGTGACAG TACTGGAAAGCCTTCTGAGGCCTGTGGATGAGTCTTTAGATCACTACAAAAAGCAGCAACTGAGGGAACTGGCGGTGCTGAATGGTACACTAAGGGAGGA AAGCCCTAGCATGAGCCCAAGTATGAGTCCAAGCATGTCACCATTCAACTCTGCAGCAGGAATGAAGCGTGCCAAGACAGGAAGATAA
AA sequence Show only first row Show all	>Lus10035768 pacid=23147598 polypeptide=Lus10035768 locus=Lus10035768.g ID=Lus10035768.BGIv1.0 annot-version=v1.0 MGERIPPGSFFQYPPSGIHHASPHRATSFPSDRERYLAELLAEREKLGPFIQVLPYCSMLLNQEIRRVSSFGQGFGEHERYEHDSPFRSLGQHPNGRTMD LDAWSAMQTEENGNLQKMASLQAASIGWPAVPGIPTTPVVKRVIRLDVPVDKFPNYNFVGRILGPRGNSLKRVEALTECRVYIRGKGSVKDSLKEEKLKD KPGYEHLNEPLHVLVEAEFPENIINARLDHAVTVLESLLRPVDESLDHYKKQQLRELAVLNGTLREESPSMSPSMSPSMSPFNSAAGMKRAKTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	0	1
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	1.0	0.8627
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	3.9	0.8514
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	4.5	0.8199
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10038623 [exp]	6.0	0.8448
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	6.2	0.8596
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	13.2	0.8409
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	13.4	0.8401
AT1G69550			disease resistance protein (TI...		Lus10038482 [exp]	35.8	0.8039
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	40.6	0.7595
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	40.9	0.7837

Compare expression of checked genes

Lus10035768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.