Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 238 / 8e-73 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037346 [exp] 586 / 0 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10037347 [exp] 278 / 2e-91 AT1G33980 70 / 9e-14 Smg-4/UPF3 family protein (.1.2) Lus10003510 [exp] 159 / 2e-44 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10009488 [exp] 132 / 1e-33 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10027099 [exp] 46 / 5e-05 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1) Lus10025489 [exp] 0 / 1 ND 53 / 2e-13
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225800 [exp] 449 / 3e-154 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2) Potri.003G005700 [exp] 425 / 8e-145 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.019G077500 [exp] 245 / 6e-75 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03467 [flax] [poplar] Smg4_UPF3 Smg-4/UPF3 family
Representative CDS sequence Show only first row Show all	>Lus10035769 pacid=23147571 polypeptide=Lus10035769 locus=Lus10035769.g ID=Lus10035769.BGIv1.0 annot-version=v1.0 ATGAAAGGTCAGTCTGATAAGACGAAGGTGGTTGTTCGGCACATGCCTCCCACGATTTCTCAATCCGCGCTTATGGAGCAAATCGATTCCGCATTTGCTG GTCGCTACAGGTGGTCTTCGTTCCGTACCGTCAAGAGCAGTCAGAAGCATCAATCCTATTCGAGGGTCTACATTGACTTCAAAACACCGGAAGATGTAAT TGACTTTGCAGAGTTCTTTAATGGGCATATGTTCGTCAATGAGAAGGGAACTCAGTTTAAAGCTGTTGTTGAGTATGCTCCCTCTCAACGTGTTCCTAGA CATGTATCCAAGAAGGATGGTCGGGAAGGCACCATATCCAAAGGCATGTCTCATCGAGAAACTATTTCTAATGTATACATGAAATGGTTTGATGGATACT GTCCAGACCCGGAGTATCTAGAATTCCTTGAAGGTATTTCAAAGCCTGTCGAGAACCTTCCTAGTGCAGAAATTCAGCTCGAAAGAAGGGAAGCTGAAAG AGCTGGTGCTGTGAAAGATGCTGTTATAGTCACGCCTCTGATGGACTTTATCCGGCAAAAACGAGCTGCCAAGAATGGCTCTCGGCGGGTACTGGCCAAT GGCAAAATTGGCAGAAGGGCTCCTACAAGTGGAAGTCCTAGCTCATCATCCAAACGGGGTTCTGACAAGAAGCGGACTTCGACAATGTATGTTTTGAGGG ATTCAGCAAAAGGTGGAGCTGGAAAAGATAAATCAACGTACATGCTTGTTTCTAAGCTAGATGATCATGCATCATCAGACAAAGCTGTTACTTCTTCTGG ACTTGAAGGTTTAGAAGATGGAAGTGGGGTTGCTGGCATCACTGATGGCGGGAAAAAGAAAATTCTACTTTTGAAAGGGAAAGAGAAAGAGATTCCATCT GTCCCCGCCGGTCCGGTGCGGCAACAGAATGTCATAGCATCTGGAAAGCATGCAACTAGTTCATCTGCGGTCAAACAGACTCACCGTCGTGAAGCTGGTG GTAGAATAATAAGGAGCATACTTCTAAAAGATCCTCATCAAGCTTCTGATGCACACTCTGAGCAGCAAAACCAGTCAAATGTTAACAAGGACAAGCGTCC TCCTCGACCTCCACAAGGGCAGGTGGTTCTGAAGGATGCTAATGGGACTCCAGATGACAAGGCTTCTGGGAATGATCCACTTGCTAGTGAAAAGCATGAA AGGCGCACAAGAAATAAGGATAGACCTGATCGTGTTGTTTGGACTCCACTTCGCAGGTCTGATGGATCGTATGCAAGTGATGAGTCCTTGTCGTCTTCTG CATCTCAATCTGCTGTTTCAAGCATTGATTCTTCTCAAGGATCACACAAGCATTTTGGTCGTCGTGTACCGCCTCATGTTCAGAGGGATTCTGATGGCCC ATCCATTGATGTGAAGGCATCAACTTCAAAGAGAGGTGGTGTTTCTGGTCACGAGGTGGGTGGCATACTCCCTGGGTTTCAGGCTCTGAAAGTTCTATCA TGA
AA sequence Show only first row Show all	>Lus10035769 pacid=23147571 polypeptide=Lus10035769 locus=Lus10035769.g ID=Lus10035769.BGIv1.0 annot-version=v1.0 MKGQSDKTKVVVRHMPPTISQSALMEQIDSAFAGRYRWSSFRTVKSSQKHQSYSRVYIDFKTPEDVIDFAEFFNGHMFVNEKGTQFKAVVEYAPSQRVPR HVSKKDGREGTISKGMSHRETISNVYMKWFDGYCPDPEYLEFLEGISKPVENLPSAEIQLERREAERAGAVKDAVIVTPLMDFIRQKRAAKNGSRRVLAN GKIGRRAPTSGSPSSSSKRGSDKKRTSTMYVLRDSAKGGAGKDKSTYMLVSKLDDHASSDKAVTSSGLEGLEDGSGVAGITDGGKKKILLLKGKEKEIPS VPAGPVRQQNVIASGKHATSSSAVKQTHRREAGGRIIRSILLKDPHQASDAHSEQQNQSNVNKDKRPPRPPQGQVVLKDANGTPDDKASGNDPLASEKHE RRTRNKDRPDRVVWTPLRRSDGSYASDESLSSSASQSAVSSIDSSQGSHKHFGRRVPPHVQRDSDGPSIDVKASTSKRGGVSGHEVGGILPGFQALKVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10035769 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037346 [exp]	1.0	0.9359
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	10.2	0.8799
AT2G25730			unknown protein		Lus10007687 [exp]	11.7	0.8792
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	12.2	0.8596
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	13.0	0.8697
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	18.7	0.8528
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	18.7	0.8567
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	20.8	0.8615
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	23.0	0.8506
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	23.2	0.8260

Compare expression of checked genes

Lus10035769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.