Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57770 712 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 122 / 3e-29 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037348 [exp] 824 / 0 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016199 [exp] 129 / 2e-31 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10029347 [exp] 127 / 7e-31 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G005800 [exp] 763 / 0 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.006G199600 [exp] 129 / 2e-31 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.016G066000 [exp] 118 / 9e-28 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10035770 pacid=23147342 polypeptide=Lus10035770 locus=Lus10035770.g ID=Lus10035770.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTGCATCCGTATTCCCCAGTTACCTCCACCATTGCAAGTCCAACTCCAGCCTTTCTTCTTCCTTTTCCAACACCTCAACTGCCGCCT CCAGAAGAGCTTCTTCACTTTTGGCGCGAAGCTCCTCCAATGGCAGTCCAACTTCCACCAACGACAAGAAATCCTTCTCAGGCAAGGCAGAGGCAGATGT GGTGGTTATTGGTAGTGGGATTGGTGGGTTATGTTGTGCTGGACTTCTAGCTAGGTATGGACAGGATGTTCTGGTACTTGAAAGCCATGATCAACCAGGA GGAGCCGCTCATGCCTTTGAGATAAAAGGCTACAAGTTTGATTCTGGCCCCTCTTTGTTCTCTGGCTTTCAGTCCAGAGGTGTTCAGGCTAACCCCCTTG CACAGGTTCTTGATGCACTTGGGGAATCCATCCCTTGCGTAAATTATGACTCTTGGATGGTCTATGTTCCCGAAGGCGAGTTCTTGTCCAGAATTGGACC GACAGAATTCTACAAGGATCTTGAGAAGCATGCAGGCCCTAATGCTGTTCAAGAATGGAAGAAACTTCTTGATGCTATACTACCTTTGTCAGCAGCTGCA ATGGCTCTTCCTCCTTTATCCATCCGAGGAGATCTCGGCGTCCTTTCGACTGCTGCTGCTAGATATGCGCCTTCTCTGTTGAAATCTTTCGCTGAGATTG GACCTCGGGGAGCCTTTGGTGCTACAAAGCTTCTGAGACCCTTCTCGGAAATTGTGGACTCGCTCGAGCTGAAAGACCCTTTTGTCCGGAATTGGGTGGA TCTTCTGGCTTTCCTCCTTGCTGGTGTGAAATCTAGTGGTATACTCTCAGCAGAGATGATTTACATGTTTGCAGAATGGTACAAACCAGGCTGCAGCCTT GAGTACCCTCTCCATGGTAGCGGAGCTATCGTGGATGCCCTTGTGCGCGGACTAGAAAAGTTTGGTGGACGATTATCTCTAAGAAGCCATGTCGAAAAGA TAGTTGTCGAAAACAACCGAGCCATCGGGGTTGAAATTAGGAGTGGCCACTCAAACCAAACCTTAACCATCCCCGTTATTAACTCGGAACTCCTTTTGGT GGCAGTTCATATGAGCAAGAAAGGCTGTCATAAGCAACGCGTCAATGTGGGATACAACCAGTTTGCTGCCAAGAGAAGTCCTCCCAAAGTCATATCTAGA GAGGATCAACAGCACACCTCAGGTTTGCCAGATGATCTGGGAATTCATCACATAGTTGTGAATGACTGGGAGAGGGGAGTGGACGCAGACCAGAATGTGG TTCTTATATCAGTTCCCAGCGTTCTGGTTCTTATATCAGTTCCCAGTGTTCTCAGTCCAGATTTGGCTCCTCCTGGGAAGCATGTTTTGCATGCTTATAC TCCAGGGACCGAGCCATTCGAGCTCTGGGAAGGGCTGGACCGCAAGAGCAATGAATACAAACAACTCAAAGAAGAAAGATCAGAGGTGATGTGGCGAGCA GTGGAACGTGCTCTAGGTCCTGAATTCGATCGAGAGAAATGCGAGGTGAAGTTGGTTGGGACTCCATTGACACATAAAAGATTCCTTAGGAGGAATAGAG GGACTTATGGACCGGCTATTGAAGCCGGTAAGGGCACTTTTCCTGGACATTCAAGTCCCATTTCGCAGCTTTATTGCTGTGGGGACTCTACATTTCCTGG GATTGGAGTCCCTGCCGTTGCAGCTAGTGGTGCCATTGTTGCCAACTCCCTTGTTTCGGTGAGTCAACACTCTCAGCTTCTCGACGCCATTGGAATCTAA
AA sequence Show only first row Show all	>Lus10035770 pacid=23147342 polypeptide=Lus10035770 locus=Lus10035770.g ID=Lus10035770.BGIv1.0 annot-version=v1.0 MAAAAASVFPSYLHHCKSNSSLSSSFSNTSTAASRRASSLLARSSSNGSPTSTNDKKSFSGKAEADVVVIGSGIGGLCCAGLLARYGQDVLVLESHDQPG GAAHAFEIKGYKFDSGPSLFSGFQSRGVQANPLAQVLDALGESIPCVNYDSWMVYVPEGEFLSRIGPTEFYKDLEKHAGPNAVQEWKKLLDAILPLSAAA MALPPLSIRGDLGVLSTAAARYAPSLLKSFAEIGPRGAFGATKLLRPFSEIVDSLELKDPFVRNWVDLLAFLLAGVKSSGILSAEMIYMFAEWYKPGCSL EYPLHGSGAIVDALVRGLEKFGGRLSLRSHVEKIVVENNRAIGVEIRSGHSNQTLTIPVINSELLLVAVHMSKKGCHKQRVNVGYNQFAAKRSPPKVISR EDQQHTSGLPDDLGIHHIVVNDWERGVDADQNVVLISVPSVLVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWEGLDRKSNEYKQLKEERSEVMWRA VERALGPEFDREKCEVKLVGTPLTHKRFLRRNRGTYGPAIEAGKGTFPGHSSPISQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	0	1
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	1.7	0.9023
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	4.0	0.8788
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	4.2	0.8939
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	5.3	0.8611
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	6.7	0.8788
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	6.7	0.8855
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	8.1	0.8255
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	9.4	0.8541
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	10.0	0.8566
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	10.9	0.8472

Compare expression of checked genes

Lus10035770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.