Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09840 589 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT1G57870 575 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT5G26751 491 / 2e-174 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 487 / 8e-173 ATSK12 Protein kinase superfamily protein (.1.2) AT5G14640 487 / 1e-172 ATSK13 shaggy-like kinase 13 (.1) AT4G00720 461 / 2e-161 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT2G30980 454 / 1e-159 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 449 / 7e-158 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT4G18710 448 / 8e-158 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT3G61160 427 / 8e-149 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037349 [exp] 692 / 0 AT1G09840 721 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Lus10031440 [exp] 487 / 1e-172 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10001519 [exp] 487 / 1e-172 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 473 / 3e-167 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 470 / 3e-165 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 468 / 3e-164 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10022254 [exp] 465 / 1e-163 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10041360 [exp] 465 / 4e-163 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10025395 [exp] 440 / 2e-154 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225700 [exp] 643 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.003G005900 [exp] 634 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.014G115600 [exp] 491 / 2e-174 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 489 / 1e-173 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.005G005400 [exp] 487 / 1e-172 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 482 / 7e-171 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 478 / 3e-168 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 467 / 5e-164 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.004G059000 [exp] 442 / 1e-155 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.011G068600 [exp] 438 / 9e-154 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035771 pacid=23147607 polypeptide=Lus10035771 locus=Lus10035771.g ID=Lus10035771.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCTAGCCTTAGCAATGGAGGTGTTGGAAGTTCAAGGTCTATTAATGGCTTCAAGAGTTCATCAAGTTCTGTTGATTGGCTCGGAAGAGAGA TGCTTGAGATGCGGTTAAGGGATAAGGTGGAGCATGATGATGATCAGGATAGTGACCTTGACGTAATTGATGGTGTTGGTGCAGAAGCAGGACATGTCAT ACGAACCACTGTAGGTGGTCGAAATGGTCAATCTAGGCAGACAATAAATTATATAGCAGAACATGTGGTTGGAACTGGTTCGTTTGGTACCGTATTTCAA GCAAAATGTAGGGAAACTGGGGAGATTGTTGCTATTAAGAAAGTTCTGCAAGACAAACGCTACAAGAACAGGGAGTTACAGATAATGCAAATGCTGGATC ACCCGAATATTGTTGGTCTCAAGCATTCTTTCTTTTCAACTACTAACAAGGAAGAGCTATACCTGAATCTCGTGCTGGAATATGTTCCCGAGACTCTTAA TCGTATCGCAAGAAACTACAACAGGGTCAATCAGCGAATTCCCTTAATATACGTGAAGCTATACACATATCAGATCTGCAGGGCACTTGCCTTTATGCAC AATTGCGTCGGTATTTGTCATCGTGATATCAAGCCTCAGAATCTATTGGTGAAAGGAGAAGCCAATGTCTCTTACATCTGCTCAAGATACTACCGTGCCC CAGAACTGATATTCGGTGCCACCGAGTACACAACTGCAATCGATATATGGTCCACTGGTTGTGTGATGGCCGAATTGCTGCTTGGACAGCCTCTGTTTCC CGGTGAGAGTGGAGTTGATCAACTAGTTGAGATCATTAAGGTGCTAGGGACACCAACCAGGGAAGAGATAAAGTGCATGAATCCAAACTACACAGAGTTT AAGTTCCCACAGATAAAACCTCATCCATGGCACAAGGTCTTCCAGAAACGGTTACCACCAGAAGCAGTTCCAAACACACGCCTTCCCAACGGGCGTCCTC TCCCTCCATTGTTCAACTTCAAATCCCAAGAGTTGTCGGGAATCCCTACTGATATAGTGAACAAGCTAATCCCCGAGCATGCCCGTAAGCACAACTTATT TATGGCTCTGGACTCCTAA
AA sequence Show only first row Show all	>Lus10035771 pacid=23147607 polypeptide=Lus10035771 locus=Lus10035771.g ID=Lus10035771.BGIv1.0 annot-version=v1.0 MASASLSNGGVGSSRSINGFKSSSSSVDWLGREMLEMRLRDKVEHDDDQDSDLDVIDGVGAEAGHVIRTTVGGRNGQSRQTINYIAEHVVGTGSFGTVFQ AKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVGLKHSFFSTTNKEELYLNLVLEYVPETLNRIARNYNRVNQRIPLIYVKLYTYQICRALAFMH NCVGICHRDIKPQNLLVKGEANVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEF KFPQIKPHPWHKVFQKRLPPEAVPNTRLPNGRPLPPLFNFKSQELSGIPTDIVNKLIPEHARKHNLFMALDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10035771 [exp]	0	1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	9.6	0.9217
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034307 [exp]	12.0	0.8949
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	15.2	0.9071
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	18.8	0.9037
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	25.7	0.8836
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	34.1	0.8982
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	45.6	0.8765
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	50.0	0.8939
AT4G09730		RH39	RH39 (.1)		Lus10018946 [exp]	59.0	0.8789
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	66.3	0.8929

Compare expression of checked genes

Lus10035771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.