Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49920 195 / 9e-60 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 119 / 5e-29 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 115 / 8e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 112 / 1e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 112 / 1e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 100 / 1e-24 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 99 / 2e-24 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT5G64430 104 / 3e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G16270 104 / 3e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT4G05150 102 / 1e-23 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037350 [exp] 577 / 0 AT5G49920 197 / 8e-61 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 127 / 2e-31 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 126 / 3e-31 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 113 / 5e-27 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 112 / 7e-27 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10035641 [exp] 106 / 1e-26 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10031750 [exp] 105 / 2e-25 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 108 / 4e-25 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 105 / 3e-24 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006200 [exp] 231 / 1e-73 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G224500 [exp] 217 / 1e-67 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 125 / 5e-31 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 124 / 1e-30 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 121 / 9e-30 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 118 / 9e-29 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G285800 [exp] 114 / 8e-28 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G123500 [exp] 115 / 1e-27 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 112 / 8e-27 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.009G080200 [exp] 110 / 2e-26 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10035772 pacid=23147519 polypeptide=Lus10035772 locus=Lus10035772.g ID=Lus10035772.BGIv1.0 annot-version=v1.0 ATGAGTCAGGAACTCAGTGGGCAAACCGTTGCTAATCTGAAAATGGCAAACAACGAGGTTTCCTCTTCCGACGATTCGGCGTCCGCTTCGGCGGCTTCCT CCCCGACGAGCAGGGTGAAGTTCCTTTGCAGCCATGGCGGCAAGATTGTGCTTAGACCTCCTGACGGTCACCTTAAATACGTCGGTGGCGAGACCCGTGT CATTGCCGTCCCGCGAGATCTCCGCTTCTCAGACCTGATGAAGAAGCTAAAATCAGAATTTGAAAGTGATGTGGTGCTCAAGTACCAGGTTGTACCTGAC GATCTAGACATATTGGTTTCTGTAAGGACTGATGAAGATCTGAAGCACATGCTGGAGGAATACGATCGCCATGAAAGTCAAGGAATAACCAAGTTTCGTG CTTTCTTGTTCCCTTCCAATCCGACAATCCTCGAGGCTCAAACAACTTCCTCTGATCCTCACGCACCTGAACAACGTTACATCGAGGCTGTCAATGGTAT GTACCGCTCAGGAGCAGCCTACTCTTCGAGACATACCTCAACTTATGCAGGCCGTCCGACTTTCAGCATATCTGCTTGTAACTCTCCCAACTGTGGTTCC CCTGAAAGCAACCGCAGCGATAATACCATGTCTCCGGAGCATCGCAGTGTGATGATGAACAACCCGCTTAGTACTGCTAAACATTCCATGTCCAGAGTGC GGAGTTCTCCGAGTCTTTGCAGTTTGAACAGTTACCAGCAGCAAGGAAGCAGCAGCAGCAGCAACTTCAGCAATCACAATATTCACAGGCCTTATCCCCA CTACTACCAGCAACAGCCACAACAACAACAACAACAGCACCATCCCCACAGCTACCAACAACTACAACAACACAAACCGCCGTCCCATGATCCTCATAGG CTGTCCCCAGGCTTGCCATTTAGCCGGCATGAGATGGGAAGAATCCCTTCTCCTGTTCCTCATCATGGTCTGAATCAGCAGCAGTACTACTCAAGCAGAC ACAGCAACGTAGCAATGGGAGGAGCTGGGAACAAGTATGGGTACCAGGATGAACATAATTATTCACCTGTTTATAGGAACTTTGACAGAATGGACAGTCT TCGTTCTAGTAGCAGAATGGGAGTTGACAGAGTTGATATGAGCTAA
AA sequence Show only first row Show all	>Lus10035772 pacid=23147519 polypeptide=Lus10035772 locus=Lus10035772.g ID=Lus10035772.BGIv1.0 annot-version=v1.0 MSQELSGQTVANLKMANNEVSSSDDSASASAASSPTSRVKFLCSHGGKIVLRPPDGHLKYVGGETRVIAVPRDLRFSDLMKKLKSEFESDVVLKYQVVPD DLDILVSVRTDEDLKHMLEEYDRHESQGITKFRAFLFPSNPTILEAQTTSSDPHAPEQRYIEAVNGMYRSGAAYSSRHTSTYAGRPTFSISACNSPNCGS PESNRSDNTMSPEHRSVMMNNPLSTAKHSMSRVRSSPSLCSLNSYQQQGSSSSSNFSNHNIHRPYPHYYQQQPQQQQQQHHPHSYQQLQQHKPPSHDPHR LSPGLPFSRHEMGRIPSPVPHHGLNQQQYYSSRHSNVAMGGAGNKYGYQDEHNYSPVYRNFDRMDSLRSSSRMGVDRVDMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10035772 [exp]	0	1
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	5.1	0.7457
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10000130 [exp]	12.7	0.7010
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	20.3	0.7327
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	20.7	0.7366
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	29.3	0.6599
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	36.7	0.6840
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	39.7	0.6606
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	40.4	0.6594
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	47.6	0.6838
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	53.0	0.6724

Compare expression of checked genes

Lus10035772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.