Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11175 105 / 8e-30 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037352 [exp] 167 / 7e-54 AT4G11175 107 / 2e-30 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038900 [exp] 151 / 6e-48 AT4G11175 109 / 1e-31 Nucleic acid-binding, OB-fold-like protein (.1) Potri.006G241100 [exp] 148 / 1e-46 AT4G11175 109 / 2e-31 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10035773 pacid=23147432 polypeptide=Lus10035773 locus=Lus10035773.g ID=Lus10035773.BGIv1.0 annot-version=v1.0 ATGACAATGTCCTGCAGCGCTGCTAGAATCCACGCTCCGGCGGCTTTACCACCAAAACCCACCTCCTCCTCTATTTTCCCCGCTCAACGAACAGTGGCGG CGGTCTCTTTCGCCAACTCGGCTTCCTCCTCATCGCTGGGCCTCAATCTTATCGCTTCCCCTCCGGCCAGAACTGCAACAGCCCGCGCCACCAAGGCCAG TCCCACGGGAGAACAGAAATGGACCTACGAAGGCTCGGTGACGGAGTCGCTACCAAATGGTATGTTCAGAATCCGCCTGGACAACGAGGACTTGATAATC GGCTACATATCTGGGAAAATTAGGAAGAATTTCGTGAGGATATTGCCAGGGGATCGAGTTAGAGTTGAGGTGAGCAGGTACGATACAACTAGAGGTCGAA TTGTTTATAGAATTAGGAACAAAGATCCCAACTCTGACTGA
AA sequence Show only first row Show all	>Lus10035773 pacid=23147432 polypeptide=Lus10035773 locus=Lus10035773.g ID=Lus10035773.BGIv1.0 annot-version=v1.0 MTMSCSAARIHAPAALPPKPTSSSIFPAQRTVAAVSFANSASSSSLGLNLIASPPARTATARATKASPTGEQKWTYEGSVTESLPNGMFRIRLDNEDLII GYISGKIRKNFVRILPGDRVRVEVSRYDTTRGRIVYRIRNKDPNSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	0	1
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	1.0	0.9577
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	1.4	0.9531
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	1.7	0.9413
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	2.0	0.9391
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	3.0	0.9292
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	3.2	0.9388
					Lus10040882 [exp]	5.5	0.9356
AT2G29180			unknown protein		Lus10016512 [exp]	5.5	0.9267
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	6.5	0.9351
AT3G23760			unknown protein		Lus10043212 [exp]	8.1	0.9117

Compare expression of checked genes

Lus10035773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.