Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 516 / 4e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37150 504 / 1e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 464 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 466 / 1e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 455 / 2e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65780 445 / 2e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 428 / 4e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 339 / 5e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 200 / 1e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 193 / 6e-51 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037353 [exp] 1424 / 0 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 1030 / 0 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 803 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 202 / 3e-53 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 175 / 2e-44 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 169 / 2e-42 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 167 / 7e-42 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 165 / 2e-41 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10015030 [exp] 161 / 1e-40 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143450 [exp] 785 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 780 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 777 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 491 / 3e-158 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 478 / 6e-153 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077100 [exp] 416 / 6e-130 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 419 / 1e-129 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 417 / 6e-129 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140601 [exp] 413 / 1e-127 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140300 [exp] 401 / 2e-126 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035774 pacid=23147333 polypeptide=Lus10035774 locus=Lus10035774.g ID=Lus10035774.BGIv1.0 annot-version=v1.0 ATGAGCAGCATGAAAAGGAAGAATTTGCGGGAGGAGAAGGATGATGATGATGATGATGATATCTTCATCAAGACTTTGTTTTCGTGGTCCATGAATGATA TTTTCAACCAACACCTCTTCCAGGTGGCAAAGATTCCTCTGTCGGTTGAGTCAGTTGAGCAGTACTATAACCAGTTCAAGATTCCTTTGTTGGAAGAGAC AAGAGCTGCACTTCACTCAGCTATGAAGGTCATCACTACCGCTCCATTCGCCCAGGTGACTGGATTCGAGGAGCGCAAGCCAAAAGGACATCTCTTGTAT CATGTTGTGGTTGATTCATGGATGAACAGATTTGGTAGTTCTGCCAAGGAGCCTTACAAGCCATCTCCTGGGGATATTGTTATATTAGCAGCTGGTTCCA AACCAGAAACTGTCTCTGACTTAAAAAGGGGAAGCATTTCTGGCTCATTGTGTTTTGCCATGATTACCAGCTTTACACCTGATGATGATGATGATGATGA CTTTCAACCTTCAAATGCATCCCCATTCTTCAGAATTCAATCAGCGTCGAAACAAGTGGAAGGTATTATGAGTGAATCCATCTCCCACGTCATCTTCTTG ACAAATGTGTTCACTAATCAAATCATTTGGTGCGGGTTACACAAGAATGGGAATGCCAGAATTGTTAATCAAGTTCTATCAGCAGAATCTATGGGAAAGG AAGACTGCAGTACTTATTGCGGTAAACAAATTGAAACAAAGAAAGCTCTGGGGAACAGTGATTCTTCCAACTTGAATGACTCTCAAACTGATGCCATCAT GGCTTGCCTTCGAAGAGTTCGCTGCCAGCATAATAGTTCCGGGTTAGAACTTATTTGGGGTCCTCCTGGGACTGGGAAAACCAAAACTCTCAGTACTTTG TTGGTTACTTTGTTGAGAATGGATTGCAGGACCTTGACTTGTACTCCAACCAATGTTGCTATCAAAGAAGTGGCTACCAGGGTTGTCAAGCTTGTGAAAC AAGTAACAGAACCATACCGGTCTCTGAATTGCGTTACTTCATTCTATCCGTTGGGGGATCTTCTATTGTTTGGAAACAAAGCTAGGCTTAAACTAGGCTC GGAAGTTGAACAAATATACTTGGATCATCGTGTGAAAAAGCTGTCACAGTGCTTTGGATCTAACTCCGGATGGAAGTACCGCATCGATTCTATGATAAAC TTTTTTGAGCATTGTGTATCTCAGTTCCTTGTTGATCAAGAAAACAAGAAGAATGGCAAGCTGAAGAAGGGTAATGAAGAAATCAAAGGGGAAAAGTGGA AAAGGAAAGATAATACTGCATTTCTTGAGTTTGCTAGAAGTAGATTTCGCACGGCTTTGTTGGAACTAGAAAACTGCTTCGTTGCTTTGTGGACTCATGT TCCCCATGGTTACTTGGGAAGATATGTCATTCGTAAATTTCAATGGCTTTTTCAGTTGCTACACTCTTTTGGAGCTTTACTAAGCCAGGATTGTGTGCAG TCTAATGAGCTAGAGAGGTTTTTTTCTCGCACAAACATCGTACAATCTTCTACTGATGTGTACATTCAGTTGAACCTTAAAAGAGCTCAATGTCTACGTG CTCTGAAAGATTTAAGCAGAAGTCTTGGTCGACTTGATTTTCCAAATACAAACCCCAATGCCATAAGAAAGTTTTGCTTGCAGAAGTCTCTGCTTATTTT TTGTACCGTATGTAGTTCACGTCGGCTGCATGCAGAGGAAATGGTTCCGTTCAAGGTGTTGGTAATCGACGAAGCAGCACAACTGAAAGAGTGTGAATCA GCATTGCCTCTGCAACTCAATGGCCTCAATCACGTCATTCTCATAGGCGACGAACGCCAATTGCCAGCTATGGTTCAAAGTGAGGCTTGTGCTGAATCAG GGTTTGGAAGAAGCTTGTTTGAAAGGTTAAGCTTGTTAGGACATCCTAGACACCTCTTGAATGTTCAGTACAGGATGCATCCATCAATCAGTTCCCTTCC AAATTCAATGTTCTACTTTGGGAAGATACAAGATGGATCTAATGTGAAGGAACCGAGTTACGACAAATGCTACCTTCCGGGAGGTCCTATGTTTGGTCCC TATTCGTTTCTAAATGTGAAAGGTGGAAGTGAGTTCTCAGATGATGTTGGACGTAGCAAGAAGAATATGGCTGAGGCTTCCATTGTGCTGAAATTGGTGC AGAATCTTCACAAAGCATGGAGTGTATCCAAAGAGAAGCTTTTTGTTGGGGTTATATCTCCATATGCCGCACAAGTCAGTGAAATTCAGCGTAAACTTGG TCGCAAATACGAAAGAATAGACGGATTCTCAGTGAAAGTAAGCTCAGTTGATGGGTTCCAAGGTGGGGAGGAAGATATCATAATCATATCCACAGTGAGG TCCAACAGCAAAGGAGCAATTGGTTTTCTTTCTAATGGACAAAGAGCCAATGTGGCTCTTACAAGAGCCAGACACTGTATGTGGATTTTGGGAAATGAGA GAACCTTGCTGAAGAGTGGATCAGTGTGGGAGAGAGTAGTTGTTGATGCTAAAGCTAGAAACTGTTTCTTCAATGCTACACTCAAAAGTCTTACAAAGGC CGACGGCACGGGTCCAAAGAAGAAGGGAAATAAAAAGGTGGTGGAGCTTTGCACAAAGTTTGATGTTCTTGGACTCAAGGAAGATGGTTCTGATGAAAAT TCTGAAATGGCGGACAAGGACGGGGTTGAATTTGATGTTGTTTAA
AA sequence Show only first row Show all	>Lus10035774 pacid=23147333 polypeptide=Lus10035774 locus=Lus10035774.g ID=Lus10035774.BGIv1.0 annot-version=v1.0 MSSMKRKNLREEKDDDDDDDIFIKTLFSWSMNDIFNQHLFQVAKIPLSVESVEQYYNQFKIPLLEETRAALHSAMKVITTAPFAQVTGFEERKPKGHLLY HVVVDSWMNRFGSSAKEPYKPSPGDIVILAAGSKPETVSDLKRGSISGSLCFAMITSFTPDDDDDDDFQPSNASPFFRIQSASKQVEGIMSESISHVIFL TNVFTNQIIWCGLHKNGNARIVNQVLSAESMGKEDCSTYCGKQIETKKALGNSDSSNLNDSQTDAIMACLRRVRCQHNSSGLELIWGPPGTGKTKTLSTL LVTLLRMDCRTLTCTPTNVAIKEVATRVVKLVKQVTEPYRSLNCVTSFYPLGDLLLFGNKARLKLGSEVEQIYLDHRVKKLSQCFGSNSGWKYRIDSMIN FFEHCVSQFLVDQENKKNGKLKKGNEEIKGEKWKRKDNTAFLEFARSRFRTALLELENCFVALWTHVPHGYLGRYVIRKFQWLFQLLHSFGALLSQDCVQ SNELERFFSRTNIVQSSTDVYIQLNLKRAQCLRALKDLSRSLGRLDFPNTNPNAIRKFCLQKSLLIFCTVCSSRRLHAEEMVPFKVLVIDEAAQLKECES ALPLQLNGLNHVILIGDERQLPAMVQSEACAESGFGRSLFERLSLLGHPRHLLNVQYRMHPSISSLPNSMFYFGKIQDGSNVKEPSYDKCYLPGGPMFGP YSFLNVKGGSEFSDDVGRSKKNMAEASIVLKLVQNLHKAWSVSKEKLFVGVISPYAAQVSEIQRKLGRKYERIDGFSVKVSSVDGFQGGEEDIIIISTVR SNSKGAIGFLSNGQRANVALTRARHCMWILGNERTLLKSGSVWERVVVDAKARNCFFNATLKSLTKADGTGPKKKGNKKVVELCTKFDVLGLKEDGSDEN SEMADKDGVEFDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	0	1
					Lus10041320 [exp]	2.0	0.8874
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	3.2	0.8851
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	3.9	0.8757
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021873 [exp]	4.2	0.7545
					Lus10009381 [exp]	4.5	0.8687
					Lus10040835 [exp]	5.5	0.8398
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	7.5	0.8030
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	8.4	0.7941
					Lus10004635 [exp]	8.8	0.7865
AT1G63060			unknown protein		Lus10001796 [exp]	9.4	0.7973

Compare expression of checked genes

Lus10035774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.