Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37150 496 / 7e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 494 / 1e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52090 451 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 442 / 1e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 427 / 5e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 426 / 2e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65780 431 / 3e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 328 / 6e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 193 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 177 / 6e-46 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035774 [exp] 972 / 0 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 965 / 0 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035776 [exp] 802 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 194 / 1e-50 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 155 / 2e-38 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10035717 [exp] 155 / 3e-38 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 154 / 7e-38 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10015030 [exp] 150 / 3e-37 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 147 / 5e-36 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143450 [exp] 746 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 745 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 739 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 546 / 2e-178 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 438 / 2e-138 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 435 / 4e-137 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077650 [exp] 390 / 2e-119 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 389 / 8e-119 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077100 [exp] 384 / 4e-118 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140601 [exp] 385 / 3e-117 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035775 pacid=23147685 polypeptide=Lus10035775 locus=Lus10035775.g ID=Lus10035775.BGIv1.0 annot-version=v1.0 ATGGGACTTCGAAGCAGGAACCTCATCGGTGGAAGATACCGTAATGGAAGTCTGAGAGGAAAGAGTTCATGGGAGGAGGAGTGGAAAGAGGCAGAGGACA AGTTCACAACTACTTTGTTTTCCTGGTCACTACATGACGTTTCAAACGAACAACTATTCCAGGTGGACAAGATTGCAGAGTCATTTGAATCAGCAAAACA GTGCTTGAATCAGTTTGTGATTCCCTTGTTGGAAGAGACAAGAGCCGAGCTTCACTCATCGGTCAAGTCAATCTCCACCGCTCCATTTGCTTTGGTATCC GGATTCGAGAGGTGCAAGCCTAAGGAAAAGATTGTGTATAAGCTTCAGGTTGATCCATGGAAGAACACGAAGTCTGGTACTTCTGGCAAGGCTGCTTACA AGACATTGCCTGGCGATTTTCTCATCCTGGCTTTTGGTTCCAAGCCTGAAACCGTATCTGATTTACAAAAGGGCGGATGCTGCTCGTGGTGTTTTGCTTT GGTTACGGGCATGTCTGATGATGCTAATGACATACAAACAGAATCACAACTGAAAATTCAGTTAGCATCAAACGAACTTGATGTTAGGAGGAATAAGTCC AATACTTACATTATCTTCTTGTCAAATACTTCCACTAACCAAAGGACTTGGTGCGGGCTGCACATGTCTGGAAACACCAAAATCATCAATCAAGTGCTTT CTGCAGAATCATTTGTGAATCGAGACTGCAGTTATAACTGTAAACAGATGGCAACAAAGTTAAATTTAGGCACGGGTGCCTCAAGCTTGAATGAGTCTCA AACTGAGGCCATTGAGGCTTGCGTTCGCAGAGTTCAGTGCAAGCATACCTCTGGTTTGGAACTCATTTGGGGTCCTCCAGGAACTGGGAAGACCAAAACT CTCAGTACTTTGCTAGTCACTTTCTTGAGCATGAATTGCAGGACCTTGACTTGTACTCCAACTAATGTTGCTATCAGAGAAGTAGCTACCAGGGTTGTCA AGCTCGTGAAGGAAGCAACAGCTCAACATGACTCATCTAACGTTGCTGCTTCGTTAGGCGATCTTCTCTTGCTTGGGAACAAACAAAGGCTTAATTTAAG CCCAGAAGTTGAAGAAATCTTCTTGGATCATCGTGTAAAGCAACTTGCCAAGTGCTTTGCATCTCATTCTGGATGGAGGTATTGCATTACTTCTACGATC GAGTTTCTGGAAAATTGTGTATCTAGTTACCGTGTTCATCAAGAAAACATGAAGGCTAAGAAAATGGAAAAGGGTGGACAAAGCCAAGGACTGAAAGTGA AGCAGAATACATTTGTCGAATATGCTAGAGATAGATTTTGCTCGCTGATGATGTCGCTCGAGAATTGCATAGTTCTTATGTGGACTCATATACCTCGTAG CTGCATCGGAAGAGATATCATTCAGAAGTTTCAATCTCTTGTTCTGCTGCTTAAGTCTTTTCCAGTTTTACTATCTAATCAAGGTGTGCAGTCTAGTGAG CTGGAGAAACTTTTCTCTCGTCCAAACATCACACAACATGCTGGTACCGTACAATATGCTGATGTGTACAATCAGTTGTGCTCTAGAAGAACTCAGTGTG TACGTGCTTTGAAAGAGTTGAGCAGGATTCTTGAAGAGCTTCCTTTTCCAAGAAATAATAGCCACTATCAGTTAAAGAAGTTTTGCTTAGAGAAATCTGT GCTTATTTTCTGCACTGCTGCTAGCTCACATAGACTGCGTTCAAAGGATATGGCTCCTTTGGAAGTGTTGGTAATAGACGAAGCAGCTCAACTCAAGGAA TGCGAATCAGCACTGGCTCTACAACTCAATGGTCTCAGTCATGCCATTCTCATAGGAGACGAATGCCAATTGCCGCCTATGGTTCAAAGCAAGGCTTGTG CAGATTCCGGTTACGGACGAAGCTTGTTCGAAAGGCTAACATTATTAAGACATCCTAGGCACCTTTTGAATATACAGTACAGGATGCATCCATCAATAAG CAGATTCCCAAATTCTTCGTTCTACCTTGGGAAGATACAAGATGGATCTAATGTGAAGGAACCGAGTTACGAGAAATGCTACCTTCCAGGGGGTCCTATG TTTGGTCCCTATTCATTTCTTAATGTGAATGGTGGAAGGGAATTCTCAGATGATGTTGGACGTAGCAAGAAGAATATGGCTGAGGCTTCCATTGTGCTGA AATTGGTGCAGAATCTTCACAAAGCATGGAGTAAATCAAAAGATAAGCTTTCGATTGGAGTTATATCTCCATATGCTGCACAAGTTGGTGAAATTCAACA TAAACTCGGTGGTAGATATGAAAAAATAGCTGGATTCTCAGTAAAAGTTAGATCAGTTGATGGTTTCCAAGGCGGGGAGGAAGATATCATAATCATATCG ACAGTGAGATCCAATAGTAGAGGAGCAATTGGTTTCCTTTCCAATGGACAAAGAGCCAATGTTGCTCTTACAAGAGCCAGGCATTGCATGTGGATTCTGG GGAATGAAACAACCTTATTGAATAGTGGATCAGTCTGGGAAACGTTAGTGCTGGATGCTAGAGCCAGAAATTGTTTCTTCAATGTTACACTTGAAAGTTT GGGGAAGGTTACTGTTTATCCAACGGAGAGATGCAATGACGATGGTGGGCTTTGGAGGAAGTTAGATCTTCTTAAATTGTAG
AA sequence Show only first row Show all	>Lus10035775 pacid=23147685 polypeptide=Lus10035775 locus=Lus10035775.g ID=Lus10035775.BGIv1.0 annot-version=v1.0 MGLRSRNLIGGRYRNGSLRGKSSWEEEWKEAEDKFTTTLFSWSLHDVSNEQLFQVDKIAESFESAKQCLNQFVIPLLEETRAELHSSVKSISTAPFALVS GFERCKPKEKIVYKLQVDPWKNTKSGTSGKAAYKTLPGDFLILAFGSKPETVSDLQKGGCCSWCFALVTGMSDDANDIQTESQLKIQLASNELDVRRNKS NTYIIFLSNTSTNQRTWCGLHMSGNTKIINQVLSAESFVNRDCSYNCKQMATKLNLGTGASSLNESQTEAIEACVRRVQCKHTSGLELIWGPPGTGKTKT LSTLLVTFLSMNCRTLTCTPTNVAIREVATRVVKLVKEATAQHDSSNVAASLGDLLLLGNKQRLNLSPEVEEIFLDHRVKQLAKCFASHSGWRYCITSTI EFLENCVSSYRVHQENMKAKKMEKGGQSQGLKVKQNTFVEYARDRFCSLMMSLENCIVLMWTHIPRSCIGRDIIQKFQSLVLLLKSFPVLLSNQGVQSSE LEKLFSRPNITQHAGTVQYADVYNQLCSRRTQCVRALKELSRILEELPFPRNNSHYQLKKFCLEKSVLIFCTAASSHRLRSKDMAPLEVLVIDEAAQLKE CESALALQLNGLSHAILIGDECQLPPMVQSKACADSGYGRSLFERLTLLRHPRHLLNIQYRMHPSISRFPNSSFYLGKIQDGSNVKEPSYEKCYLPGGPM FGPYSFLNVNGGREFSDDVGRSKKNMAEASIVLKLVQNLHKAWSKSKDKLSIGVISPYAAQVGEIQHKLGGRYEKIAGFSVKVRSVDGFQGGEEDIIIIS TVRSNSRGAIGFLSNGQRANVALTRARHCMWILGNETTLLNSGSVWETLVLDARARNCFFNVTLESLGKVTVYPTERCNDDGGLWRKLDLLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	0	1
AT2G38430			unknown protein		Lus10030356 [exp]	1.4	0.7943
					Lus10004635 [exp]	1.4	0.8444
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	4.9	0.6832
					Lus10009381 [exp]	7.1	0.7529
					Lus10008678 [exp]	9.0	0.6800
					Lus10040835 [exp]	9.8	0.7079
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	10.0	0.7006
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	13.7	0.6859
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	14.3	0.5349
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	14.7	0.6130

Compare expression of checked genes

Lus10035775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.