Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26570 702 / 0 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 604 / 0 Plant protein of unknown function (DUF827) (.1) AT5G42880 443 / 2e-142 Plant protein of unknown function (DUF827) (.1) AT1G45545 424 / 7e-135 Plant protein of unknown function (DUF827) (.1) AT2G38370 71 / 3e-12 Plant protein of unknown function (DUF827) (.1) AT4G17210 58 / 2e-08 Plant protein of unknown function (DUF827) (.1) AT4G27595 49 / 2e-05 Plant protein of unknown function (DUF827) (.1) AT3G51720 49 / 2e-05 Plant protein of unknown function (DUF827) (.1) AT2G40480 48 / 3e-05 Plant protein of unknown function (DUF827) (.1) AT5G55860 47 / 6e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037354 [exp] 1602 / 0 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 90 / 4e-18 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 87 / 5e-17 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 56 / 2e-07 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 53 / 1e-06 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 52 / 2e-06 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10039107 [exp] 50 / 1e-05 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 49 / 2e-05 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029800 [exp] 839 / 0 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 830 / 0 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 89 / 8e-18 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 75 / 1e-13 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.019G049201 [exp] 57 / 8e-08 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 54 / 5e-07 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 48 / 4e-05 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 47 / 6e-05 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10035778 pacid=23147633 polypeptide=Lus10035778 locus=Lus10035778.g ID=Lus10035778.BGIv1.0 annot-version=v1.0 ATGGAGGATGTAAAAGTGGATCAAGTTACACCTCCTGCTCCTGCGGAAGCTCCGCCACCACCCTCCCACAATAATGGACTTCGTCCTGATGATACATCTT TAGGCCCTCTTGCTAATGGAAACACAGAAAACAGTGGTTTCCCTTCTGATGTAGACAATCCTGGAGCATCAGGCGTACAAGATGTTGCCCCAAGCCAGGT TTCTTCTGTCAAATATGCACTTCCTTCAAATTTAGGTTTAGATGAATGTCAGTTGGCACCCAAGACAAGCTCTCCACTTTTAGAGGATAATAAAAAAGAT TCAGGTTCTGAAGCAGTTGGAAATTCGTCCAATGGGCCTCAAACTCAATTGGACAATAAAGCAGCTGTGGGAAATCAATTGCGTGTAGCTCCTGTGACTG AAACCTTGTCTTTGTCGTCTCCAGATGGAAAGCAAAATCCAAACGGTGCTGAACTCAACCAGAACTCTTATGTTGCTTCAGAAGCAGTAGATACGACTAG TTCGACTCACAGTCCCCTTATTCAGATGGATGATACTGCTTTAAAGCTCATTCCTACGTCTACCGAAGCTCAGAAATCTGAAGTTGCTGGTTCTATTGAG AGTCCTCTTGTTGAGATAATGGAAACTCCCCTGGCCCAGGATCCCTTTGATGCCCAGAATGCGCTTCTTCAGACTGAGGACATGGTACTAGTCCCTTCTG CTCAGAAGGTATTGATAGATTCTCAGGAAAATGATGAGACAGTGCAGAAATCGTCTGCTGCTCAGCCATCTGAAGGTACCTCTTCAGTGGGCAGTCAATC CAGTCATGTAGATGATAGCACTGTACCGGCTGCTTCCTCTCCTAAACAGAAGGCGCAAGCTAATGAACTTTCTCTGCCTCCTGTAAAGATCAGGCTGGAG TCCGATCTTCCCGGTTCACCACTAGCTAGGATTATAAACCCTGCCACCACTAGAACACCTAAATCTGGCGATTCAACTAAACTTCCCAAGCCGACTGACT TGAACAGGGGAATCATCGATACAGCAGCACCTTTTGAATCTGTTAAACAAGCTGTTTCGAAGTTCGGGGGAATTGTTGATTGGAAAGCACATAGAATGCA AACGGTAGAGAGACGCAAGCTTGTAGAGCAAGAACTAGACAAGTTACAGGATGAGATGCCTGAGTACAGGAAGAGGTCAGAAGCTGCAGAAGAAGCTAAG ACTAAAGTAATCAAGGAGCTGGACAGTACTAAGAGGCTTATTGAAGAGCTTAAACTCAATCTTGAGAGGGCACAAACAGAAGAGCATCAGGCAAAACAGG ACTCTGAGCTTGCCAAGCTTCGAGTCGAAGAGTTGGAACAGGGAATTGCTGATGAGGCTAGTGTTGCAGCCAAGGCACAACTCGAGGTTGCTAAATCAAG ACATGCAGCAGCAGTTTCAGAACTGAAGTCCGTCAATGAAGAGTTGGAAGCTTTGCGCAAGGAATATGCTTCTTTGGTCAATGAGAAAGAAGATGCCACG AAGAAAGCTGAGGAGGCTGTCTCTGCATCCAAGGAAGTTGAGAAGACAGTTGAGGAGCTCACTATTGAGCTAATTGCGACAAAGGAATCTTTGGAATCTG CTCATGCTGCTCATATGGAGGCAGAGGAGCATAGAATAGGAGCAGCCATGGCCAGGGAGCAGGATGCAGTTTATTGGGAGAAGGAGTTGAAAAAGGCAGA GGAGGAGCTCCAGAAGCTTAACCAACAGATTCTTTCAGCAAAAGATCTCAAATCAAAACATGATGCTGCTTCTGCTTTGCTTGTTGATCTGAAGTCTGAA TTGGCAGCTTACATGGAGTCTAAGTTAAAAGAAGAAAGTACCGAAGAAGGTAACGGAACTATGCAAGAGAAGAAAAATCATACTGAAATTCAAGCGGCAG TTGCTTCGGCTAAGAAGGAACTTGAGGAAGTGATGCTCAACATTGAGAGAGCAAATGCAGAAGTGAACTGTTTAAAGGTGGCTGCCGCCTCATTACAGGT GGAGCTTGAAAAGGAAAAATCTACTCTTGCCACGATCAGGCAGAGAGAAGGAATGGCATCAGTTGCGGTTGCTTCTCTTGAAGCCGACATAGACAGGACC AAATCCGAGATAGCGCTTGTTCAAATGAAGGAGAAAGAAGCACGGGAGAAAATGGTGGAAATCCCCAAGCAACTGCAGCAAGCTGCACATGCAGCCGATG AAGCCAAATTACTTGCTCAACAGGCTCGTGAGGATCTTCGAAAGGCAAAAGAAGAGGCGGAACAAGCACAGGCTGGGGCATGTACTATGGAAAGCAGATT GCTAGCAGCTCAAAGGGAGATCGAGGCTGCAAAGGCTTCTGAAAAGTTGGCATTGGATGCCATTAGAGCCTTGCAAGAAAGTGAATCAGCTCAAACTGGA GGAGATGCAGATTCCGCGAATGGGGTAATACTTTCCCTTGAGGAGTACTATGAACTCAGCAAACAAGCTCACGAGGCAGAGGAGCAAGCTAATGAGAAGG TGGCAACAGCTATTGCTCAGATCGAGTTAGCCAAGGATTCCGAGTCCAAAACTTCAAAGAAGTTGGAAGAGGTGAACAAAGAGCTAGCTGCTAGGAAGGA AGCTCTAAGTGTTGCGATGGACAAGGCCGAGACTGCCAAGGAAGGGAAGTTGGGTGCAGAACAAGAACTGAGAAAATGGAGGTCTGAAAATGAGCAAAAA CGAAAGGCTGGTGAATCTGCTCATGGGGGTTCAAACAACACTAAGAGCCCGAGAGGGAGCTTCGAAGGGAGCAAAGAACCAACGACCGGTGCTGACTACG ATATGTCTAAGCAAGAAACCCCTGCAAGCCCCAAGGTGGGAAGTAACACCGAGTCTGAGCCCTCGCCGGATGTAAAGTCGACAAAGAAGAAGAAGAGATC AATGTTCCCACGATTCCTCATGTTTCTTACAAGGAGAAAGTCGCATTCTTCCAAGTAA
AA sequence Show only first row Show all	>Lus10035778 pacid=23147633 polypeptide=Lus10035778 locus=Lus10035778.g ID=Lus10035778.BGIv1.0 annot-version=v1.0 MEDVKVDQVTPPAPAEAPPPPSHNNGLRPDDTSLGPLANGNTENSGFPSDVDNPGASGVQDVAPSQVSSVKYALPSNLGLDECQLAPKTSSPLLEDNKKD SGSEAVGNSSNGPQTQLDNKAAVGNQLRVAPVTETLSLSSPDGKQNPNGAELNQNSYVASEAVDTTSSTHSPLIQMDDTALKLIPTSTEAQKSEVAGSIE SPLVEIMETPLAQDPFDAQNALLQTEDMVLVPSAQKVLIDSQENDETVQKSSAAQPSEGTSSVGSQSSHVDDSTVPAASSPKQKAQANELSLPPVKIRLE SDLPGSPLARIINPATTRTPKSGDSTKLPKPTDLNRGIIDTAAPFESVKQAVSKFGGIVDWKAHRMQTVERRKLVEQELDKLQDEMPEYRKRSEAAEEAK TKVIKELDSTKRLIEELKLNLERAQTEEHQAKQDSELAKLRVEELEQGIADEASVAAKAQLEVAKSRHAAAVSELKSVNEELEALRKEYASLVNEKEDAT KKAEEAVSASKEVEKTVEELTIELIATKESLESAHAAHMEAEEHRIGAAMAREQDAVYWEKELKKAEEELQKLNQQILSAKDLKSKHDAASALLVDLKSE LAAYMESKLKEESTEEGNGTMQEKKNHTEIQAAVASAKKELEEVMLNIERANAEVNCLKVAAASLQVELEKEKSTLATIRQREGMASVAVASLEADIDRT KSEIALVQMKEKEAREKMVEIPKQLQQAAHAADEAKLLAQQAREDLRKAKEEAEQAQAGACTMESRLLAAQREIEAAKASEKLALDAIRALQESESAQTG GDADSANGVILSLEEYYELSKQAHEAEEQANEKVATAIAQIELAKDSESKTSKKLEEVNKELAARKEALSVAMDKAETAKEGKLGAEQELRKWRSENEQK RKAGESAHGGSNNTKSPRGSFEGSKEPTTGADYDMSKQETPASPKVGSNTESEPSPDVKSTKKKKRSMFPRFLMFLTRRKSHSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	0	1
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	1.0	0.9364
AT1G24560			unknown protein		Lus10025844 [exp]	4.9	0.7169
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	8.5	0.7026
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	8.9	0.7353
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	11.2	0.7391
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10033714 [exp]	13.8	0.6594
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	14.8	0.7496
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	17.2	0.7056
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	19.5	0.7058
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	26.6	0.6948

Compare expression of checked genes

Lus10035778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.