Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36980 204 / 7e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037355 [exp] 222 / 4e-76 AT1G36980 242 / 3e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089300 [exp] 213 / 9e-73 AT1G36980 242 / 4e-84 unknown protein Potri.005G171901 [exp] 201 / 5e-68 AT1G36980 179 / 2e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05255 [flax] [poplar] UPF0220 Uncharacterised protein family (UPF0220)
Representative CDS sequence Show only first row Show all	>Lus10035779 pacid=23147583 polypeptide=Lus10035779 locus=Lus10035779.g ID=Lus10035779.BGIv1.0 annot-version=v1.0 ATGGATTTGTTGGAGATGTGGGCAATCTTCGGGCCAGGGGTGGCAGGTGCTGTCTTTGGAGCTGGCTGGTGGTTTTGGGTCGATGCTGTGGTTTGTAGCT CAGTTCAAGTATCTTTTGTCCATTACCTTCCTGGTATCTTTGCATCATTTGCGGCCCTGATGTTTAACTGTGTTAGAAAAGAGGATATCGATTACTCTCC CTACGATGAAGGCGAATGGAGACTGAAGCTGTGGTTATTCTTCGCATACGTTGTGTCCTTTGTTTCACTAGCTGCGTCAGTGGGTTTGTTGATACAAGAT TCCATCGTCAAGGACGGGCCTTCAGTATGGGCAGGAACAGCAGGTGTTTTGCAGTGTGTCTTTGTCCTGATAAGTGGGTTGATCTACTGGACATCACATT CGGAATGA
AA sequence Show only first row Show all	>Lus10035779 pacid=23147583 polypeptide=Lus10035779 locus=Lus10035779.g ID=Lus10035779.BGIv1.0 annot-version=v1.0 MDLLEMWAIFGPGVAGAVFGAGWWFWVDAVVCSSVQVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYDEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD SIVKDGPSVWAGTAGVLQCVFVLISGLIYWTSHSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36980			unknown protein		Lus10035779 [exp]	0	1
AT4G13530			unknown protein		Lus10030342 [exp]	1.0	0.9346
AT1G36980			unknown protein		Lus10037355 [exp]	2.4	0.9038
AT4G13530			unknown protein		Lus10041074 [exp]	3.5	0.8947
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	3.9	0.8903
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	4.6	0.8967
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	5.2	0.8825
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	6.9	0.8602
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	7.5	0.8836
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	8.0	0.8830
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	8.1	0.8542

Compare expression of checked genes

Lus10035779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.