Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24530 258 / 3e-84 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 256 / 5e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 245 / 5e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 211 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 211 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 211 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 194 / 3e-59 KUOX1 KAR-UP oxidoreductase 1 (.1) AT2G38240 188 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 187 / 3e-56 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 183 / 6e-55 ATFLS1, FLS flavonol synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024882 [exp] 291 / 6e-97 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 284 / 3e-94 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 258 / 3e-84 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 258 / 4e-84 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 252 / 1e-81 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 220 / 1e-68 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 219 / 2e-68 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 207 / 6e-64 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10006518 [exp] 193 / 2e-58 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223000 [exp] 309 / 5e-104 AT4G10500 238 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039500 [exp] 296 / 5e-99 AT4G10500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G013600 [exp] 279 / 3e-92 AT4G10500 235 / 4e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 275 / 1e-90 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 269 / 2e-88 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 268 / 9e-88 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 267 / 2e-87 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 265 / 1e-86 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 256 / 3e-83 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040400 [exp] 249 / 1e-81 AT5G24530 159 / 5e-47 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035782 pacid=23147456 polypeptide=Lus10035782 locus=Lus10035782.g ID=Lus10035782.BGIv1.0 annot-version=v1.0 ATGAATAGGATCCTTGCTTTCCAACCGAAACACAAATTTGTGCCTGAATCTTACATTCTCCCACCATCCACCAGACCCCGACTCCTCGACATAACTGCAC CGCCTTCCGATCATCTCATTCCGGTCATCGACATCGGTCCAAACACGAACCGTGCTCAAATCGTTAAGAGCGTTCTCGAAGCTGGTCAAGAATTCGGCTT CTTTCAGCTGATAAATCATGGGATCTCGGAGAAACTTATGAAAGAAGTGATGGAAGTGGCGGCGGAGTTCTTTGAGCTGCCAAGAGAGGAGAAGTCGAAA TTTTGTGGGGGTGATCCTGAAGAAGATGACGTCAGCCGAATGAGTTGCAAACTTTCGACAAGTCTGGACTATGAGAACGAACAAGTGCACTTTTGGAGAG ATGTCCTAAGGCTTCTTTGTCATCCTATCCAAACTCATCTCCACTCTTGGCCTCATAACCCTCCTCGATATCGGGAAGTGGTTGGAGAATTCGCTAGGAA AGTGAGGGAGTTGAGTATGTGGGTGTTGGAGACGATAAGTGAAGGATTAGGGCTTGAATTTGGATATTTTATTAATGGTGAAGTAAGCCAAGTTCAGATG ATGTCAGTAAACAACTACCCACCATGCCCAAATCCAAGCTTGACTCTAGGAGTTCCCAAGCACAGTGATGCAAGTCTCCTCACCATTTTGCTGCAAGGGG AAGTCAATGGACTTCAAGTGCTCCTCAAAGATGGGCAATGGCATGGGGTTCAGCCTCTTCCCAATGCACTCCTCGTCAACATCGGTAATGTCTTGCAGGT GATTAGCAACGGGAGGTTGAAGAGTATTGTGCACAGGGTAGTGACAAACAAAGAGTTAGCAAGGACAACAGTCGTGTGCTTCACAAATCCGACCACTGAT TGTCACATCGAGCCAGCAAAAGCATTGATAGATGAATCGCATCCCCAGATATACAGAGGTTCCCTCTACAAAGATATAAGAGATGCAACTGTGGCTGATG CTCATACCAGACAAGAGCCACTCGACTTCTTCAAGATCCGCTACTAG
AA sequence Show only first row Show all	>Lus10035782 pacid=23147456 polypeptide=Lus10035782 locus=Lus10035782.g ID=Lus10035782.BGIv1.0 annot-version=v1.0 MNRILAFQPKHKFVPESYILPPSTRPRLLDITAPPSDHLIPVIDIGPNTNRAQIVKSVLEAGQEFGFFQLINHGISEKLMKEVMEVAAEFFELPREEKSK FCGGDPEEDDVSRMSCKLSTSLDYENEQVHFWRDVLRLLCHPIQTHLHSWPHNPPRYREVVGEFARKVRELSMWVLETISEGLGLEFGYFINGEVSQVQM MSVNNYPPCPNPSLTLGVPKHSDASLLTILLQGEVNGLQVLLKDGQWHGVQPLPNALLVNIGNVLQVISNGRLKSIVHRVVTNKELARTTVVCFTNPTTD CHIEPAKALIDESHPQIYRGSLYKDIRDATVADAHTRQEPLDFFKIRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	2.2	0.9873
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	2.8	0.9854
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	3.5	0.9801
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	4.9	0.9780
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	5.3	0.9447
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	6.2	0.9270
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10020109 [exp]	6.2	0.9314
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	6.7	0.9766
					Lus10032472 [exp]	7.0	0.9680
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	7.9	0.9604

Compare expression of checked genes

Lus10035782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.