Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65700 815 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 813 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 772 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 706 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 536 / 2e-177 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 496 / 4e-162 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 490 / 1e-159 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 483 / 1e-157 HSL2 HAESA-like 2 (.1) AT1G28440 483 / 2e-157 HSL1 HAESA-like 1 (.1) AT3G24240 469 / 9e-151 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037358 [exp] 1467 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 852 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 847 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 837 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 827 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 674 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 665 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038382 [exp] 620 / 0 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 525 / 6e-173 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223900 [exp] 1117 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 894 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 876 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 830 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G019900 [exp] 699 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 695 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 531 / 9e-176 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 523 / 1e-172 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 523 / 2e-172 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G126100 [exp] 509 / 4e-167 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035783 pacid=23147637 polypeptide=Lus10035783 locus=Lus10035783.g ID=Lus10035783.BGIv1.0 annot-version=v1.0 ATGGACATTTCCAGTTGCGAGTTGGACGGTCAGATTCCATGGCAGCTTGGGAACTTGAAGCAACTCGATACCCTCTACTTGCATGCCAATATGCTCTCAG GTTTCATCCCAAAGGAGCTTGGGAACTTGACCAACTTGGTCAACCTTGATCTCTCCATCAATGCACTCACTGGCGAAATCCCAGTCGAGTTCATCAATCT CAAGCAACTCAGGCTCTTCAATTTGTTCATGAACAAGCTGCACGGCTCCATTCCTGATTACATTGCAGAGCTGCCTAACTTGGATACACTGGGCCTGTGG ATGAACAACTTCACTGGTGTCATCCCCAGAAAACTCGGCCAGAATGAGAAGCTCCAGAGTCTTGATTTGTCGTCAAACAAGCTCACTGGAACTATCCCTC CTGACCTATGCTCATCCAACCAGCTGAGGATTCTGATTCTCTTCAAGAACTTCCTTTTCGGGCCAATTCCGGACGGCTTAGGAACATGCTACAGCTTGAC TAGAGTGAGGCTGGGGGAGAATTACTTGAATGGCAGTATTCCAAATGGTCTCATTTACATGCCACTGCTCAACTTAGCTGAGTTCCAGAACAACTACCTA TCAGGAGTACTATCTGAGAACGGCAACAGCTCGTCCAAACCTGACAAATTAGGCCAATTGGATCTCTCAAACAATCTCCTTTCAGGTCCCTTGCCATCCT CACTTTCAAACTTCTCTTCTCTGCAAATTCTCCTCCTCGGTCGCAACAACTTCTCCGGATCAATCCCATCCACCATTGGCGAACTCCACCAAATCCTGAA GCTAGAACTAAGCTCCAATTCGCTCTCTGGTCCAATCCCTCCTGAACTTGGCAACTGCAGCCATCTAGCCTTCCTTGACTTCAGCCAGAACAATCTCTCT GGTCCAATTCCACCAGAAATCTCCAACATCCACATCCTAAATTACCTAAACCTATCAAGAAACCATCTCAACCAAACAATCCCGAAATCCATCGGCACAA TGAAATCCTTGACGATCGCGGATTTCTCCTTCAACCAATTCTCCGGGAAGCTCCCCGATTCGGGCCAATTCTCGGTATTCAACGCCTCCTCCTTCGCCGG AAACCCTAAACTCTGCAGCAACATTCTAAACAACCCTTGCAATCTCACAACAAACACAGACGAGCCTACAAAATCGCCAGACAATTTCAAGCTAATCTTC GCCCTAGGGCTCCTCATTTGTTCCCTGGTGTTCGCCACGGCGGCGATCGTGAAGGCGAGGTCGTTCAAGCGTTCGAGCGGGTCTGAGAAGACTTGGAAGA TGACGTCATTTCAGAAGTCGACGGAGTTCTCCGTCGCGGACATCCTCGAGTGCGTCAAGGACGGGAACGTGATCGGGAGGGGAGGCGCCGGGATCGTTTA CCACGGCAAGATGCCGAGCGGGTGCGAAGTAGCGGTGAAGAAGCTGCTCGGGTTCGGACCTCCGAACGGGCACGACCACGGGTTCCGGGCGGAAATCCAA ACCCTAGGGAACATCCGCCACCGGAATATAGTAAAACTGGTGGCATTCTGCACCAACGGGGAGACGAACCTGCTAGTGTACGAATACATGAGGAACGGCA GCCTGGGAGAGGCGCTCCACGGCAGGAAAGGCGCTGCCGGGGGTACTGGATTCCAGCTGGGGTGGGGTCTCCGGTACAAGATCGCGGTGGAGGCGGCGAA GGGGATGTGTTACCTGCACCATGATTGCTCGCCGTTGATCGTACACCGTGATGTGAAGTCAAACAACATTCTGTTGGACTCTGGGTTTGAGGCCCACGTG GCGGATTTTGGGCTGGCCAAGTTCCTGGTGGACGAGTGTATGTCCGCTATTGCCGGCTCTTACGGCTACATTGCCCCTGAGTATGCGTACACTTTACGAG TGGACGAGAAGAGCGATGTGTACAGTTTTGGGGTCGTGTTGCTTGAACTCCTTACGGGGCGGAGGCCCGTGGGAGATTTCGGGGAAGGTGTGGACATAGT GCAATGGACTAGAAAGGTGACGTGCCAACGTAGGGAAGAGGTGATGAGCATCATTGACCGGCGGATGACGATGGTGCCCAAGGAGGAGGCGATGCATTTG TTCTTCATTGCTATGTTGTGCAGTCAGGAGAACAGCATCGAACGGCCGACGATGAGAGAAGTCGTGCAAATGTTGTCGGAATATCCTCACCACTTGACTG CTTCCCATCCTCTTCCTTCTTCTTCGATTACCGCTCCACAAGTACTAAAGAGTGCAAGAGGAGGAGAAGGAGAAAAGAAAAAAAACTCAATATTGAAACA ACAAAATGTATTGGTTTAA
AA sequence Show only first row Show all	>Lus10035783 pacid=23147637 polypeptide=Lus10035783 locus=Lus10035783.g ID=Lus10035783.BGIv1.0 annot-version=v1.0 MDISSCELDGQIPWQLGNLKQLDTLYLHANMLSGFIPKELGNLTNLVNLDLSINALTGEIPVEFINLKQLRLFNLFMNKLHGSIPDYIAELPNLDTLGLW MNNFTGVIPRKLGQNEKLQSLDLSSNKLTGTIPPDLCSSNQLRILILFKNFLFGPIPDGLGTCYSLTRVRLGENYLNGSIPNGLIYMPLLNLAEFQNNYL SGVLSENGNSSSKPDKLGQLDLSNNLLSGPLPSSLSNFSSLQILLLGRNNFSGSIPSTIGELHQILKLELSSNSLSGPIPPELGNCSHLAFLDFSQNNLS GPIPPEISNIHILNYLNLSRNHLNQTIPKSIGTMKSLTIADFSFNQFSGKLPDSGQFSVFNASSFAGNPKLCSNILNNPCNLTTNTDEPTKSPDNFKLIF ALGLLICSLVFATAAIVKARSFKRSSGSEKTWKMTSFQKSTEFSVADILECVKDGNVIGRGGAGIVYHGKMPSGCEVAVKKLLGFGPPNGHDHGFRAEIQ TLGNIRHRNIVKLVAFCTNGETNLLVYEYMRNGSLGEALHGRKGAAGGTGFQLGWGLRYKIAVEAAKGMCYLHHDCSPLIVHRDVKSNNILLDSGFEAHV ADFGLAKFLVDECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGEGVDIVQWTRKVTCQRREEVMSIIDRRMTMVPKEEAMHL FFIAMLCSQENSIERPTMREVVQMLSEYPHHLTASHPLPSSSITAPQVLKSARGGEGEKKKNSILKQQNVLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	0	1
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	2.2	0.9307
AT1G68430			unknown protein		Lus10003042 [exp]	2.8	0.9280
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	3.0	0.9246
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	4.5	0.9182
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	4.5	0.9139
AT1G11915			unknown protein		Lus10023362 [exp]	5.3	0.9069
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	6.0	0.8895
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	7.1	0.8850
AT1G68430			unknown protein		Lus10034103 [exp]	7.3	0.9096
AT1G11915			unknown protein		Lus10038443 [exp]	8.1	0.8826

Compare expression of checked genes

Lus10035783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.