Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20270 66 / 4e-13 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G27060 66 / 4e-13 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 62 / 8e-12 Leucine-rich repeat protein kinase family protein (.1) AT4G18640 62 / 1e-11 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G05160 61 / 1e-11 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G49750 61 / 1e-11 AtRLP44 receptor like protein 44 (.1) AT5G65700 60 / 4e-11 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G45840 59 / 1e-10 Leucine-rich repeat protein kinase family protein (.1.2) AT5G67200 58 / 2e-10 Leucine-rich repeat protein kinase family protein (.1) AT2G01820 58 / 2e-10 CYCJ18 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037358 [exp] 221 / 1e-67 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 71 / 1e-14 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038381 [exp] 67 / 1e-13 AT4G20270 457 / 5e-152 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019277 [exp] 64 / 1e-12 AT3G49750 399 / 8e-142 receptor like protein 44 (.1) Lus10011561 [exp] 64 / 2e-12 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10018733 [exp] 64 / 3e-12 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 63 / 4e-12 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011585 [exp] 61 / 2e-11 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036426 [exp] 61 / 3e-11 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223900 [exp] 147 / 1e-41 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 66 / 6e-13 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 64 / 1e-12 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G046900 [exp] 64 / 3e-12 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030800 [exp] 63 / 3e-12 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 63 / 6e-12 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.014G012300 [exp] 61 / 1e-11 AT3G49750 343 / 1e-119 receptor like protein 44 (.1) Potri.016G137000 [exp] 61 / 3e-11 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G007500 [exp] 59 / 4e-11 AT3G49750 364 / 5e-128 receptor like protein 44 (.1) Potri.005G031300 [exp] 59 / 2e-10 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035784 pacid=23147587 polypeptide=Lus10035784 locus=Lus10035784.g ID=Lus10035784.BGIv1.0 annot-version=v1.0 ATGGTCATGGTCCCTTTCATTGTCCTCCTCGTCACCACCTTATTCTCCACTACTCTCACTTCCACTTGTTATGCTTCCCTTGTCAATGATTTCCATACCT TGCTCACTCTTAAACAAGGCTTCCAGTTCCCTCAACCGGCCTTGGCATCCTGGACTGTCTCCAATCAGACCTCATTCTGCTCTTCTTGGCCTGGAGTTCA CTGCTCCAGAGGCAGAGTCGTTACTTTGGACTTGACGGATTTCAATCTTTATGGCTCCATCTCACCTCCTCATATACTTTCCAGGCTCGACCAGCTTGTA ACCCTGTCCCTGTCCGGAAACAATTTCACGGGCACCATTGATATTTCTAGCTTCGGAAATCTGAAGTTCATCAATATCTCGAACAACCAATTCAGTGGCG GTCCTGGCGGGGGGGGCTTTCTGCTTCCACCACGGATAGCTCGACTTGCTGTCCCCGTCAAATTTTGA
AA sequence Show only first row Show all	>Lus10035784 pacid=23147587 polypeptide=Lus10035784 locus=Lus10035784.g ID=Lus10035784.BGIv1.0 annot-version=v1.0 MVMVPFIVLLVTTLFSTTLTSTCYASLVNDFHTLLTLKQGFQFPQPALASWTVSNQTSFCSSWPGVHCSRGRVVTLDLTDFNLYGSISPPHILSRLDQLV TLSLSGNNFTGTIDISSFGNLKFINISNNQFSGGPGGGGFLLPPRIARLAVPVKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	1.0	0.9395
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	2.0	0.9297
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	2.8	0.9116
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	3.5	0.9179
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	3.9	0.9283
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	4.0	0.9239
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	4.5	0.9197
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	6.5	0.9164
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	8.9	0.8707
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	10.2	0.8878

Compare expression of checked genes

Lus10035784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.