Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61580 643 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1) AT1G43170 639 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006181 [exp] 728 / 0 AT1G43170 679 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) Lus10041041 [exp] 672 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10037360 [exp] 633 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194500 [exp] 665 / 0 AT1G43170 686 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) Potri.002G066200 [exp] 664 / 0 AT1G43170 701 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) Potri.003G008300 [exp] 611 / 0 AT1G61580 626 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF00297 [flax] [poplar] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Lus10035786 pacid=23147377 polypeptide=Lus10035786 locus=Lus10035786.g ID=Lus10035786.BGIv1.0 annot-version=v1.0 ATGTCTCACCGTAAGTTTGAGCACCCTAGACATGGTTCTTTGGGATTTCTCCCAAGGAAGAGGGCTGCCCGCCACAGAGGAAGAGTGAAGGCTTTTCCCA AGGACGATCCATCAAAGGAACCAAGGCTGACCGCTTTCTTGGGTTACAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAGCCTGGGTCAAAGCT GCACAAGAAAGAGACATGTGAAGCTGTTACGATCATTGAAACCCCACCTTTGGTTGTGGTCGGAGTTGTTGGTTATGTGAAAACACCCAGTGGTCTCCGT TCTTTGACCACTGTCTGGGCCCAGCATTTGAGTGAGGATGTTAAGAGAAGGTTCTACAAGCACTGGGCTAAGTCAAAGAAGAAGGCTTTCACCAAGTACT CCAAGAGGTTTGAGACTGATGAGGGCAAGAAGGACATCAATTCCCAGCTGGAGAAGCTGAAGAAATATGCAACTTGCATCCGTGTCATTGCCCACACTCA GATCAGGAAGATGAAGGGACTGAAGCAGAAGAAGGCCCACCTTATGGAGATTCAGGTCAATGGCGGTGACATTGCAAAGAAGGTTGACTTTGCCTACAGC TTCTTTGAGAAGCAGATTCCTATTGATTCTGTCTTCCAGAAGGATGAGATGATTGACATCATTGGAGTTACCAAGGGTAAGGGTTATGAAGGTGTTGTCA CTCGTTGGGGTGTTACCCGCCTTCCCAGGAAGACCCATCGTGGTCTTCGTAAGGTTGCTTGTATTGGGGCTTGGCATCCTGCTAGGGTGTCCTACACAGT TGCTAGGGCTGGACAGAACGGTTACCATCACCGTACTGAAATGAACAAGAAAATCTACAAGCTTGGCAAGTCTGGACAGGACTCTCACTCTGCAATGACT GATTACGACAGGACTGAGAAGGATATCACTCCTATTGGTGGGTTCCCCCATTACGGTGTGGTGAAGGAGGATTACATTATGATCAAGGGTTGCTGTGTCG GTCCCAAGAAGCGTGTGGTGACCTTGAGACAGTCTCTGTTGAAGCAGACATCCAGGACTGCACTGGAACAGGTGAATCTCAAGTTCATCGACACTTCTTC CAAGTTTGGCCATGGACGATTCCAGACCACTGCGGAGAAGCTCAAGCACTATGGCCGCGTCAAGGCTTAG
AA sequence Show only first row Show all	>Lus10035786 pacid=23147377 polypeptide=Lus10035786 locus=Lus10035786.g ID=Lus10035786.BGIv1.0 annot-version=v1.0 MSHRKFEHPRHGSLGFLPRKRAARHRGRVKAFPKDDPSKEPRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPSGLR SLTTVWAQHLSEDVKRRFYKHWAKSKKKAFTKYSKRFETDEGKKDINSQLEKLKKYATCIRVIAHTQIRKMKGLKQKKAHLMEIQVNGGDIAKKVDFAYS FFEKQIPIDSVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKLGKSGQDSHSAMT DYDRTEKDITPIGGFPHYGVVKEDYIMIKGCCVGPKKRVVTLRQSLLKQTSRTALEQVNLKFIDTSSKFGHGRFQTTAEKLKHYGRVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	0	1
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	1.0	0.9856
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	1.4	0.9751
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	1.7	0.9681
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	2.6	0.9600
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	3.5	0.9585
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	4.2	0.9639
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	4.2	0.9598
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	5.1	0.9584
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	5.8	0.9563
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	5.9	0.9648

Compare expression of checked genes

Lus10035786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.