Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09812 74 / 4e-17 unknown protein AT1G58007 63 / 4e-13 unknown protein AT1G11120 62 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037361 [exp] 210 / 4e-70 AT1G09812 97 / 2e-26 unknown protein Lus10018462 [exp] 59 / 2e-11 AT1G11120 122 / 3e-36 unknown protein Lus10011221 [exp] 59 / 2e-11 AT1G11120 121 / 8e-36 unknown protein Lus10018564 [exp] 57 / 6e-11 AT1G11120 74 / 1e-17 unknown protein Lus10039796 [exp] 57 / 1e-10 AT1G11120 122 / 3e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224200 [exp] 112 / 5e-32 AT1G09812 118 / 4e-35 unknown protein Potri.003G006900 [exp] 111 / 7e-32 AT1G09812 105 / 6e-30 unknown protein Potri.004G037200 [exp] 62 / 1e-12 AT1G11120 147 / 9e-46 unknown protein Potri.019G103800 [exp] 60 / 8e-12 AT1G11120 119 / 5e-35 unknown protein Potri.011G045900 [exp] 59 / 3e-11 AT1G11120 133 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035787 pacid=23147643 polypeptide=Lus10035787 locus=Lus10035787.g ID=Lus10035787.BGIv1.0 annot-version=v1.0 ATGAGCCAATTCAACTCTACAAGTCCAACAAAGCCATGGAACATATACTACACAAGCTCATCATCAGACCACTCGCCACCACAATCACAGGCAGCACCAG CAGGAGGAGGAACAGTGATCATCAGCCACGAAGAGGCTCCGTGGAAGAGCTTCGGTACATCGATGAGCGCAGTCTCGTTCGGGTTTGTAGCCACGGCTAT ACTCATCTCAATGTTCCTCGTCATGGCCATCTTCGAGCACCTCTTCAGGCCGAACGACCCTTCTTCTTCTTTCTCTTCACCCCAGGATGTCTCAACTAAC CTTGCCCCTGCTGCCTCTGCTTCACTACCCCCAAGGCACTTGCACAAACTCAAGAGCACACACATGGTTGAAGCAGGATCATCATATGGATCATCAGATT ATTCAGTAGTGATGCCAGGACATGAGTTCCCAAGCTACATTGCTCAGCCTGCACCTTTGTTGCCACCACCACCACCATGTTCAAGGGAAAGGATCTCTTG GCCTTCTCATACCTGA
AA sequence Show only first row Show all	>Lus10035787 pacid=23147643 polypeptide=Lus10035787 locus=Lus10035787.g ID=Lus10035787.BGIv1.0 annot-version=v1.0 MSQFNSTSPTKPWNIYYTSSSSDHSPPQSQAAPAGGGTVIISHEEAPWKSFGTSMSAVSFGFVATAILISMFLVMAIFEHLFRPNDPSSSFSSPQDVSTN LAPAASASLPPRHLHKLKSTHMVEAGSSYGSSDYSVVMPGHEFPSYIAQPAPLLPPPPPCSRERISWPSHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09812			unknown protein		Lus10035787 [exp]	0	1
					Lus10016958 [exp]	1.4	0.9448
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	2.2	0.9222
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	4.2	0.9121
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	4.5	0.9245
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	5.3	0.9230
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	6.2	0.9236
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10017258 [exp]	6.3	0.9093
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	7.5	0.8667
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	8.2	0.9026
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	8.3	0.8937

Compare expression of checked genes

Lus10035787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.