Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16610 635 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 567 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 545 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 541 / 1e-179 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 535 / 4e-179 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 530 / 2e-176 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 521 / 1e-173 unknown protein AT3G03580 522 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 518 / 2e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 514 / 2e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037362 [exp] 915 / 0 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 592 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 569 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 540 / 3e-180 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 536 / 7e-178 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 533 / 8e-177 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 525 / 1e-174 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 526 / 5e-174 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 523 / 6e-174 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006800 [exp] 1046 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G191000 [exp] 605 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 580 / 0 AT3G22690 582 / 0.0 unknown protein Potri.001G466066 [exp] 578 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 564 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 558 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 550 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 545 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 544 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 544 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035788 pacid=23147671 polypeptide=Lus10035788 locus=Lus10035788.g ID=Lus10035788.BGIv1.0 annot-version=v1.0 ATGTTACAGCGAGCAACTTGTAGCATACGACACAAAGCAGCAGCATCTGGTTCTCGAACACTTTCTGATTACACATTTCTCCTCTGCGCTTCCATCCAAT TCAATTCCCTCACCCTCATCCATCAAAGGTTCATTGCAACCTTCGCACTACCGGAACGTCCTAATACACGTGACAAGTTTGAAAATGCTCCCAAGGTGTT TGACAAAATTCCCCAGAGACTCCCGAGAGGAGTGATACAGTGGAATCATTTGATCAGATCGTATGCTTGGAATGGACCCTTCGAGAAATCCCTCGATTTC TACTACCAAATGCTGGATTGTGGAATTATTCCCAATAAATACACATTTCCTTTTGTTCTCAAAGCTTGTTCGGCTCTTCAGGCTGTAGACCAAGGCAGAG GAATTCACGCTCACGCTAAAAGGCTTCAACTTGATTCTGATGTTTACGTTTCGACTGCTTTGGTGGATATGTATTTGAAATGCGGGTGCCTTAGTGAAGC TATGGAGGTGTTTGATGGCATGCCTCGTAGAGATGTTGTTGCCTGGAATTCCATGATTGCTGGTTTCTCATTATGCGGGGGTGGTGATTACGCTGAGGTG ATTCGCTTGCTCCTGAAAATGCAGGAGGATGTGAGTCCTAACTCTTCCACCATCGTGGGTGTCCTTCCGATGGTTGCTCAAGCAAAGGCTTTGAGCCATG GGAAGGCGATGCACGCTTATTGCATTAGGAGGGGTTACAACAATGGTGTGGTGGCTGGAACTGGGTTCTTAGATATGTACGCCAAGTGTCATTGCATCTC TTATGCGAGAAGGATATTCGACGTGATGGGAATTTCGAAAAATGAAGTCACTTGGTCAGCCATCATTGGAGGCTGTGTTGCTTGTGATCTCATGGAGGAG AGTTTGGATTTATTTCGTAGACTGTTGTCAGTAAAGGACGAATCAGGAACTTATCCTACAGAAGCTACTCTTTCTACAGCAGTTCGAGCTTGTGCAAAGA TGAACGATTTCGGAACTGGAAAATGCTTGCATGGTTATTGCTTGAAGACGGGTGCTGTTTTCGATATGATGGTATGCAACACTTTACTGTCGATGTATGC AAAATGTGGGGTTATCGACGACGCCAGTAGTTTTTTCAACGAAATGCTGTTAAAAGATGCGGTTACTTATGCTGCTATAATTTCGGGATACGTTCAGAAC GGATATGCTGAGGAGGCATTACAAATGTTCTTTAAGTTGCAATGGTCTGGACTAGATCCAGATATTTCGACAATGATAGGGATCCTCCCTGCGTGTTCCC ATTTGGCCGCTCTTCAACATGGTTATTGCAGTCACTCGTACGCTATAGTCCATGGTTTTGCGTCTCGTACCATAGTCTGCAATGCACTCATTGATATGTA TGCAAAGTGTGGGAAGATCTATACAGCAAGGAAAGTGTTTGATACAATGGATGATCGGGACTTGATATCTTGGAACTCGATGATAGATGCCTATGGGATT CACGGGCTCGGCAAGGATGCATTGTCATTATTTAAAGAGATGCAGGTTGAAGGCACAATGCCAGATGATGTAACATTCATCTGTCTCTTATCAGCTTGCA GCCATTCAGGACTTGTTGATGAAGGGAAAAGGTGTTTCAGTTCCATGACCCAAGATTTCGGCATCAAACCAAGAATGGATCACTATATATGTATGACCGA TCTCCTCAGCCGAGCTGGACTTTTAGACGAAGTTCGCAAGTTCATACAAGATATGCCGTTCAAACCCGATGTTCGAATATGGGGCTCTGTGTTGGCTTCC TGCAAGATACACAAGAACATCGAACTTGGAGAACAAGTATCGAAAGAAATCGAGAGGTTAGGACCGGAATCTACAGGGAACTTTGTTCTTCTATCCAATA TGTACAGCACTATTGGGAGATGGGATGATGCTGCACGAGTCAGGCTTACACAAAAGGAGATGGGATTCAGGAAAAGTCCCGGATGGAGTTCGGTCGAGGT TGGCGGCAATGTTCACACATTTGTTGGTGGGGATAGGTCTCATCCACAATCGCAAGAGATAAACAAGAAACTTGATGAACTGCAAGTAGAGATGAAGAAG CTAGGATATACTGCAGAATTAAGCTTTGTTTTTCAGGATGTTGAAGAGGAAGAGAAGGATAAGATCCTATTGTACCACAGTGAGAAACTAGCAATTGCAT TTGGAATTCTCAGCATGAGCCCCTCGAAGCCCATCTTCGTAACCAAGAATCTGAGAGTATGTGGTGATTGTCACAATGCTATCAAACTGATCTCTCTCAT TGCAAAGAGAGACATTATTGTTAGAGATGCTAGTCGATTTCATCACTTCAAGGATGGAAATTGTAACTGTGGAGACTTCTGGTAA
AA sequence Show only first row Show all	>Lus10035788 pacid=23147671 polypeptide=Lus10035788 locus=Lus10035788.g ID=Lus10035788.BGIv1.0 annot-version=v1.0 MLQRATCSIRHKAAASGSRTLSDYTFLLCASIQFNSLTLIHQRFIATFALPERPNTRDKFENAPKVFDKIPQRLPRGVIQWNHLIRSYAWNGPFEKSLDF YYQMLDCGIIPNKYTFPFVLKACSALQAVDQGRGIHAHAKRLQLDSDVYVSTALVDMYLKCGCLSEAMEVFDGMPRRDVVAWNSMIAGFSLCGGGDYAEV IRLLLKMQEDVSPNSSTIVGVLPMVAQAKALSHGKAMHAYCIRRGYNNGVVAGTGFLDMYAKCHCISYARRIFDVMGISKNEVTWSAIIGGCVACDLMEE SLDLFRRLLSVKDESGTYPTEATLSTAVRACAKMNDFGTGKCLHGYCLKTGAVFDMMVCNTLLSMYAKCGVIDDASSFFNEMLLKDAVTYAAIISGYVQN GYAEEALQMFFKLQWSGLDPDISTMIGILPACSHLAALQHGYCSHSYAIVHGFASRTIVCNALIDMYAKCGKIYTARKVFDTMDDRDLISWNSMIDAYGI HGLGKDALSLFKEMQVEGTMPDDVTFICLLSACSHSGLVDEGKRCFSSMTQDFGIKPRMDHYICMTDLLSRAGLLDEVRKFIQDMPFKPDVRIWGSVLAS CKIHKNIELGEQVSKEIERLGPESTGNFVLLSNMYSTIGRWDDAARVRLTQKEMGFRKSPGWSSVEVGGNVHTFVGGDRSHPQSQEINKKLDELQVEMKK LGYTAELSFVFQDVEEEEKDKILLYHSEKLAIAFGILSMSPSKPIFVTKNLRVCGDCHNAIKLISLIAKRDIIVRDASRFHHFKDGNCNCGDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	0	1
AT5G49120			Protein of unknown function (D...		Lus10037493 [exp]	1.4	0.8744
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	3.5	0.8592
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	8.8	0.8859
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	13.0	0.8573
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	13.5	0.8380
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	14.3	0.8646
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	14.7	0.8510
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	18.6	0.8106
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	20.7	0.8013
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	21.4	0.8392

Compare expression of checked genes

Lus10035788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.