Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 903 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 605 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 475 / 8e-161 MAC/Perforin domain-containing protein (.1) AT1G29690 445 / 6e-150 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037363 [exp] 1087 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 737 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 736 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 580 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 492 / 2e-167 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 491 / 4e-167 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 454 / 1e-153 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 439 / 1e-147 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 400 / 2e-131 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006500 [exp] 1018 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 800 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 783 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G047700 [exp] 653 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 651 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 533 / 0 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 533 / 0 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 494 / 1e-168 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 448 / 3e-151 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 448 / 5e-151 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10035789 pacid=23147574 polypeptide=Lus10035789 locus=Lus10035789.g ID=Lus10035789.BGIv1.0 annot-version=v1.0 ATGGCACTCAGACTTCCTGCTCCTAAGGCAGCTGAGTTTGCAATCGGCTCCATAGGGCTTGGATATGACATTGCAGTCGATCTGAGGTTAAAATACCGAA AAGGAGATGTAAATGATTCACGCTTGATTGAGATTGATGAGGACGGTGGTCGAGAGATCGTATTACCTGGTGGGATTGTCATCCCAAATGTCCCAAAATC AGTTAAATGTGATAAAGGTGAAAGAACGAGGTTTAGATCAGATGTTCTGTCTTTCCAGCAGATGTCGGAGCAATTCAACCAGGAAATGTCTCTAACAGGA AAAATACCCTCTGGACTCTTCAATACCATGTTTGAATTTTCAAGCTGCTGGCAGAAAGATGCAGCAAACACCAAAACCCTTTCTTTTGACGGGGTATTCA TTACACTATACTCAATTGCACTGGAGAAATCTCAGATTGTTCTCTGTGATCATGTTAAGAAGGCAGTCCCGTCATCGTGGGAACCAGCTTCCCTGGCCAA GTTCATCGAAACATTTGGAACACATATTATTGTTGGTGTCAAGATGGGTGGAAAGGATGTGATATTCATAAAACAGCAGCACTCTTCAACTCTTCAAACA GCTGATCTGCAGAAAAGATTGAAGGAGATTGCCGATAAAAGATTTTCAGATGTCAATGGCCAGTATAGTTCTTCTTTTTCAGAAGTATACCAAAATAAGA AGTTTGATATAAGAGAGCAGCGATTGAGGTTTGCTGATACAAGTCCTTCCAGTTCTTATTCACACAAGGAGTCGAGAATTCCAGAATCTGATGTGCATGT CCCCTTTCTTGTTTATTCGCCGTCTTCTCAGGATATCACCCGAATTTACAAGAGAAGAGGCGGAAACGATAGTGGATACCTTTCACATAGCGAGTGGTTA AACACCGTTCAATTAGAGCCCGACGTGATCTCTATGTCATTCATCCCGATCACTTCTCTGTTGAATGGAGTGCCAGGGAGTGGATTCTTGAGCCATGCCA TAAATCTCTATTTAAGATATAAGCCTCCAATTGAAGAGCTACACCAGTTTCTGGAATTTCAGCTGCCACGGCAGTGGGCGCCAGTGTTCAGTGAGCTTCC TCTTGGCCCGCAACGGAGGCAACATAGCAGCTCATCCTTACAGTTTAGCTTTATGGGTCCCAAGCTGTTTGTGAACACAATCCCGGTTGACGTCGGTCAG AGGCCGGTGACTGGCCTTAGACTATATCTGGAGGGCAGAAGATGCAACCGTTTAGCCATACATCTACAGCATCTTTCCTCTCTTCCCAAGATCTTTCAAC TCAAAGATGATCCAAATGGGAACTTCCCCCATGATGCCTGTGACCGGAAATATTACGAGAAGGTTCAGTGGAAGAATTTCTCACACGTCTGCACAGCTCC TGTAGAATCAGAAGAGGAAATCTCTATAGTAACCGGCGCCCAGTTACAGGTGGAGAACTCCGGGTTTAAGAGTGTTCTTTTCCTAAGGCTTCGATTCTCA ACCGTTTTGGGAGCTGCAGTTAGAAAGCATCCCGAGTGGGACGGATCGCCAGGTTTGGCAGCAAAATCCGGATTGATATCCACATTAATAAGCCATCATT TCACTTCAGTAGCACAGAAGCCGCCTCCACGAGCAGCCGATGTGTATATAAACTCAGCTGTATACCCAGGCGGACCGCCCGTTCCGGTGCAAGCCCCCAG GCTTCTCAAGTTTGTGGACACAACAGAGATGGCAAGAGGTCCGCAAGACAATCCTGGTTACTGGGTTGTTTCTGGGGCGAGACTTGTCGTTGAGAAGGGA AGGATCTCGCTCCGCGTCAAGTATTCCCTACTAACCATTTTATCCGATGATGACGATTCAGAAACAGATCACCTAGGCTGA
AA sequence Show only first row Show all	>Lus10035789 pacid=23147574 polypeptide=Lus10035789 locus=Lus10035789.g ID=Lus10035789.BGIv1.0 annot-version=v1.0 MALRLPAPKAAEFAIGSIGLGYDIAVDLRLKYRKGDVNDSRLIEIDEDGGREIVLPGGIVIPNVPKSVKCDKGERTRFRSDVLSFQQMSEQFNQEMSLTG KIPSGLFNTMFEFSSCWQKDAANTKTLSFDGVFITLYSIALEKSQIVLCDHVKKAVPSSWEPASLAKFIETFGTHIIVGVKMGGKDVIFIKQQHSSTLQT ADLQKRLKEIADKRFSDVNGQYSSSFSEVYQNKKFDIREQRLRFADTSPSSSYSHKESRIPESDVHVPFLVYSPSSQDITRIYKRRGGNDSGYLSHSEWL NTVQLEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRRQHSSSSLQFSFMGPKLFVNTIPVDVGQ RPVTGLRLYLEGRRCNRLAIHLQHLSSLPKIFQLKDDPNGNFPHDACDRKYYEKVQWKNFSHVCTAPVESEEEISIVTGAQLQVENSGFKSVLFLRLRFS TVLGAAVRKHPEWDGSPGLAAKSGLISTLISHHFTSVAQKPPPRAADVYINSAVYPGGPPVPVQAPRLLKFVDTTEMARGPQDNPGYWVVSGARLVVEKG RISLRVKYSLLTILSDDDDSETDHLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	0	1
AT5G67620			unknown protein		Lus10011549 [exp]	5.3	0.7709
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10027658 [exp]	6.8	0.7991
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	7.1	0.8009
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	13.8	0.7700
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	14.0	0.7538
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	18.1	0.7147
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	19.0	0.7530
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	20.6	0.7765
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	23.9	0.7520
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	31.0	0.7244

Compare expression of checked genes

Lus10035789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.