Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09810 337 / 1e-104 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 298 / 1e-89 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G17330 290 / 8e-86 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 284 / 3e-83 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G13460 271 / 2e-78 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 265 / 4e-78 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13060 266 / 9e-77 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G55500 263 / 2e-76 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G58190 256 / 2e-74 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G03950 249 / 6e-73 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037364 [exp] 1006 / 0 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10037365 [exp] 863 / 0 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 290 / 9e-85 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 285 / 4e-83 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10002624 [exp] 276 / 1e-80 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 272 / 3e-78 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10034792 [exp] 265 / 2e-76 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 265 / 3e-76 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 254 / 1e-72 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223800 [exp] 584 / 0 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.003G008400 [exp] 557 / 0 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.008G080800 [exp] 328 / 9e-100 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 326 / 9e-99 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G100200 [exp] 291 / 7e-85 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.010G152300 [exp] 288 / 2e-83 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.007G002800 [exp] 277 / 3e-80 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 276 / 4e-80 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G222700 [exp] 271 / 6e-79 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.019G034300 [exp] 269 / 7e-79 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10035790 pacid=23147609 polypeptide=Lus10035790 locus=Lus10035790.g ID=Lus10035790.BGIv1.0 annot-version=v1.0 ATGAATTGGCTCTCTGAGACTGAATCCATAGCCACGGGATTGAAGCTGGAACCTGTTAATAAATTGGCTGAGAATGACAAGCATTCAAGAAAAGATGCAA TGCTGTCCAATACAATCTCTTCCATTCCTTCAAGAGATTCTAAATCTAGTGCTAAACGTGAGTCTGATGTGACCTCTGGCATCAAAGGTGTCCAAATGGA ATCTTTTGGCTATAATGGGCCGTTTCCTCAGATGGATGAGCATGGCTATTTTCAAGCAGATGGTTCTCATATGGCTATGCAATCTGACAATGGCCAAATG GTGTATTACATGCCCGGATACAACCCATACTCTCCTGGGGCAGTTGTTGGTGTTGACGGTCAAACTGCTAATCAGCAGCAGTTTTATCCTCCATCTGAAT ACATTCAACATCCTGTTTCTTACGGATCAGAAGCTGTGCCTTGTTATCAGTGGGATGCTACTTATCTCAGTGAAACTCCCAATGGTAATAATAGTTTTGG GACTGATAACCACAACCGGGGTGGAGCTACTCTTCCAAAATTTAATGGATTGAACTCTATGAAAACTAATGGCAATATCAGCAGCAAATTCCCCAAGCCT AGTGGTACACAGGATGTTAAGCCTCTAATTAAGGTTCCTCCATACAGCACAGATTACTCAACAGGTGTGTTAAGCGGATTCAATAATGGCGTAGGAAAGT TACGTCCCTTCAGTGGCCAGAGTCACTATGCTCTTTCACAGTACGGATCCCTGGGCTACAGAAATGATGCCAGCACATGGAATGTAAATGATAGGAACCG ATCACGATACAGAACACAGAGAAATGGAAGCTTTGAATCTTCTATTGAGTTGGCCTGCGGCCCCAGGGGTGCCAACAAGAGTGTGCCTACAGATCCGGCT GTGAAGAAGGAAAATCCGTTATCATTGTTCAGCAAGGACCAGTATAACTTGCAGGATTTTGAAACTGTATATGAGAGCGCCAAGTTTTATGTTATCAAGT CTTATAGTGAAGATGACATCCACAAGAGCATCAAGTACAATGTCTGGTCAAGTACACCAAACGGCAATAAAAAGCTTGATGCAGCTTTTCGTGATTCGGA GGAGAAATCAAGGGAGAGTGGCACTAAGTGTCCAGTTTTCCTCTTTTTCTCGGTAAATGGTAGTGGGCAGTTTGTTGGGTTGGCTGAAATGACGGGGCTG GTGGACTTCAACAAAGACATGGACTTTTGGCAAGTTGATAAGTGGAGTGGTTTCTTCCCTTTGAAGTGGCATATAGTTAAGGACATTCCCAACACTCAGT TGAGGCATATTGTACTTGAGAACAATGATAACCGGCCCGTCACTTTTAGCAGGGACACTCAGGAGATTGGACTGAAGCAAGGCCTGGAAATGCTGAAAAT TTTCAAGGAGTACACAGCAAAAGCATCTTTGTTGGATGACTTCACCTTCTATGAAGATAGAGAGAAGGCTCTCCATGCCAAGAAGAACAAGCCTGCAACT TTGAAAATGGAGGAATACGAGAGTGGCGATTTTGTTAATGAGAGAGAAGTAGGAGGAAAGAAGTACGAAGATGATGGTGGAATGACAAAAAGGCAAAGTG ATGCTTCCACACTGATCAATTTAACCAAGAATTTATCTCTGAATGCTGAACCTATTCAATCGGGATTGAAGTCAGAGCCACCAAGTAAATTCGCTGAGCA TGATGTGGGTTCTGGAAAAGATGGAGTACCGACCAATTCCCCTGCCTCCATTCCCAGTGCAGAGATCGTGAATTCTGGGATTAAGGGTGTGAATGGCCCC GACTCCAATGGGAAGCTTGATGTTTATAATCCACCAACCAACGGTTATGGTTATTACTACCCAGGATATAGTGGACCCTACGGTCAGATGGACGATCAAG GATTTTTCCAGCCTGATGGTTCTATCGCAGGTTTGCAGCCGGACAATGGTTCACTAGTCTACTTCTATCCTGGCTATGATCCATATGGTACCGGGGGAGT TCTGGGAGTTGATGGTCAACAACCCTACTACTCGTCTCCTGGATATCCAATGTCATATGGGACGGACGCTATGTCTTGCTATCCTTGGGATTCAACATAC ATGGGAAATATACCAAATGGAAATGCTGGTTATGGGAATGGAAAGTATGGCCCTGGATCTAATGGTGTCACCAAGTCCAATGGCCTGAACTCTACTAAAC CAAATGGAAACCTTGACAGCAAATTTCCCAAGGCTACAAATATGCAGACAACTAGACAGCTTAACAAGGTTTCTCCTCTGGGTTCCGACTTTTCCGCTGG CTATTTCAAAGGGTATCAGCCTTTGGGCAAATTTTCTCCATTTAATGGCCAAAAACAAGCTCCTTTCTCTCCGAACGGTTTTGTTAACTACAGACAAAAT GGAAGAGTATGGAATGGCAATTACAGAAACAAGCCTAGGGACAGAACCAACAGAAATGGTGATTTTGATAATGGTACGGAACTAGCTTGCGGTCCTAGGG CGTCCAACAGAAGTGCACCTTTGGATCCTTCTGCAAAGAAGGACGAGCTGGAGGTTCCCATTTGTGGAGAGCAGTATAATCGTCCAGATTTTGAAATCGG GTATACAAATGCGAAGTTCTATGTTATCAAATCATACAATGAAGATGACATCCACAAAAGCATCAAGTACAATGTCTGGGCAAGTACTCCCAATGGAAAC AGAAAGCTAGATGAGTCATATCGATCAGCACAAGAGAAATTAAGCGAGACTGGAGTCAAAAGCCCAATATTTCTCTTTTTCTCGGTGAATGGAAGTGGTC AGTTTGTTGGGATAGCTGAAATGGTTGGACAGGTTGACTTCAACAAGGACATGGACTTTTGGCAGCTGAACAAGTGGAATGGTTTCTTCCCTGTCAAGTG GCATATAGTAAAAGACATCCCTAACAATCAATTGAGGCACATCATACTCGAGAATAACGAAAACAAACCCGTGACTTTTAGCCGGGACACCCAGGAGATT GGAATGAAGCAAGGCTTGGAAATGTTGAGCATATTCAAGAGCTACTCACCGAAGTCATCATTATTGGAAGACTTCACCTTTTACGAAACGCGGGAGAAGT CTCTTAGCACTAAAAAGAACAGCAAGTCCACTACCGTTGAAACTGAAGCAGTTGGGAACGGTGAAATTGACAAGGATGCCAAAACAGGAGATGAGGGATC TGAGGAGGATGTGAAGATTGAGAAGGATCTTGTGGATCTAACAAAGAATCTGAGCATAAACGGCGGCTGCCATCTGAAGGAGAATCCTGCGGTTGAGGCA ATAGAGAATGGGGTCCCTGGTGTTGTTGCTGTTGCTGCTGCTGCACCATAG
AA sequence Show only first row Show all	>Lus10035790 pacid=23147609 polypeptide=Lus10035790 locus=Lus10035790.g ID=Lus10035790.BGIv1.0 annot-version=v1.0 MNWLSETESIATGLKLEPVNKLAENDKHSRKDAMLSNTISSIPSRDSKSSAKRESDVTSGIKGVQMESFGYNGPFPQMDEHGYFQADGSHMAMQSDNGQM VYYMPGYNPYSPGAVVGVDGQTANQQQFYPPSEYIQHPVSYGSEAVPCYQWDATYLSETPNGNNSFGTDNHNRGGATLPKFNGLNSMKTNGNISSKFPKP SGTQDVKPLIKVPPYSTDYSTGVLSGFNNGVGKLRPFSGQSHYALSQYGSLGYRNDASTWNVNDRNRSRYRTQRNGSFESSIELACGPRGANKSVPTDPA VKKENPLSLFSKDQYNLQDFETVYESAKFYVIKSYSEDDIHKSIKYNVWSSTPNGNKKLDAAFRDSEEKSRESGTKCPVFLFFSVNGSGQFVGLAEMTGL VDFNKDMDFWQVDKWSGFFPLKWHIVKDIPNTQLRHIVLENNDNRPVTFSRDTQEIGLKQGLEMLKIFKEYTAKASLLDDFTFYEDREKALHAKKNKPAT LKMEEYESGDFVNEREVGGKKYEDDGGMTKRQSDASTLINLTKNLSLNAEPIQSGLKSEPPSKFAEHDVGSGKDGVPTNSPASIPSAEIVNSGIKGVNGP DSNGKLDVYNPPTNGYGYYYPGYSGPYGQMDDQGFFQPDGSIAGLQPDNGSLVYFYPGYDPYGTGGVLGVDGQQPYYSSPGYPMSYGTDAMSCYPWDSTY MGNIPNGNAGYGNGKYGPGSNGVTKSNGLNSTKPNGNLDSKFPKATNMQTTRQLNKVSPLGSDFSAGYFKGYQPLGKFSPFNGQKQAPFSPNGFVNYRQN GRVWNGNYRNKPRDRTNRNGDFDNGTELACGPRASNRSAPLDPSAKKDELEVPICGEQYNRPDFEIGYTNAKFYVIKSYNEDDIHKSIKYNVWASTPNGN RKLDESYRSAQEKLSETGVKSPIFLFFSVNGSGQFVGIAEMVGQVDFNKDMDFWQLNKWNGFFPVKWHIVKDIPNNQLRHIILENNENKPVTFSRDTQEI GMKQGLEMLSIFKSYSPKSSLLEDFTFYETREKSLSTKKNSKSTTVETEAVGNGEIDKDAKTGDEGSEEDVKIEKDLVDLTKNLSINGGCHLKENPAVEA IENGVPGVVAVAAAAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	0	1
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	1.4	0.9589
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	2.0	0.9506
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	3.2	0.9413
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	3.5	0.9514
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	4.2	0.9542
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	5.5	0.9503
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	6.2	0.9348
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	6.5	0.9304
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	6.9	0.9395
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	8.1	0.9393

Compare expression of checked genes

Lus10035790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.