Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09800 414 / 3e-145 Pseudouridine synthase family protein (.1) AT3G06950 83 / 9e-18 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037366 [exp] 632 / 0 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1) Lus10039480 [exp] 77 / 2e-15 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10023799 [exp] 57 / 9e-09 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10037367 [exp] 0 / 1 AT1G47840 97 / 9e-29 hexokinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008500 [exp] 430 / 3e-151 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1) Potri.008G206200 [exp] 86 / 8e-19 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 58 / 4e-09 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10035791 pacid=23147553 polypeptide=Lus10035791 locus=Lus10035791.g ID=Lus10035791.BGIv1.0 annot-version=v1.0 ATGCCGAATAACTCCGCCAAACACTGCTTGTTCTTATCTGAATCTGCTGACAGTGAAAGGCCTCCAAAGCTTCCAAACACTCAGCAGGGACTCCCTGACG TTGGCGACGAATCAGAAGAAGAGGAACACCAAAATAGTATGTGTCCGAACCCTCAGCTTCAACGCTATCTAGTTGCTATTGAGTATATAGGCACTCGATT CTCTGGTTCTCAGAAGCAGGCCTCTGGCAGAACTGTTGTTAGTGTTCTTGAGGATGCAGGTGTGCATGCCTTATCAAATGTTTGCCATGTCGATGTTGAA CGAATTAGCAAAAGGAAACCTGGTGAAGTTTTGCCACCACATGAATCAGATGTGGTTCGGAGAGCAGTGAACCATTTTTTACAGAAGCATGAGGGTGATA TCATGGTCACAGATGTTAGATGTGTTCCAGCAGATTTCCATGCAAGATTCAAGGCACAAGGGCGCATGTATTTCTATCGTTTGATGACTGGACTGGAGCC GTTGTCTGCCTTCGAAAGAGACCGTGTTTGGCATGTACCCGAAGAGCTAAATATTGTTGCGATGAAGGAAGCATGCAAAGTTCTCATCGGACATCATGAT TTCAGTTCCTTTAGAGCATCTGGTTGTCAGGCCAAATCACCGATCAGAACTCTAGATGAGCTCTCAGTTAATGAGGTGGTTCCAACGCCGTACTTCCCTT CAATCTTTGAGAGGGAACAAAACAGTGCAGAGGAAGCCGTGCAACAGTGCTCTGGCAATAGCGGAATCGGTCTGGGATTTGGGATAAGAAAGAAGCACCG TTGCTATGTAATAACAGCCGGTGCACGTTCTTTTCTTTATCACCAGGTCAGACTGCTGGTTGGTGTTCTCAAATGTGTTGGCACGGGGGAACTTACAGTA TCAGATGTGACGAGGATACTGGAGGCAAGATCCGTGACTGCCACAAGTGCCATGGCTCCAGCTTGTGGCCTCTACCTTGGACAGGTGAAGTATGAGTTGC CTGCAGAGACATGA
AA sequence Show only first row Show all	>Lus10035791 pacid=23147553 polypeptide=Lus10035791 locus=Lus10035791.g ID=Lus10035791.BGIv1.0 annot-version=v1.0 MPNNSAKHCLFLSESADSERPPKLPNTQQGLPDVGDESEEEEHQNSMCPNPQLQRYLVAIEYIGTRFSGSQKQASGRTVVSVLEDAGVHALSNVCHVDVE RISKRKPGEVLPPHESDVVRRAVNHFLQKHEGDIMVTDVRCVPADFHARFKAQGRMYFYRLMTGLEPLSAFERDRVWHVPEELNIVAMKEACKVLIGHHD FSSFRASGCQAKSPIRTLDELSVNEVVPTPYFPSIFEREQNSAEEAVQQCSGNSGIGLGFGIRKKHRCYVITAGARSFLYHQVRLLVGVLKCVGTGELTV SDVTRILEARSVTATSAMAPACGLYLGQVKYELPAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	0	1
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	1.4	0.9491
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	4.5	0.9396
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	5.1	0.9441
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	7.7	0.9342
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	8.7	0.9406
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	10.5	0.9360
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	11.8	0.9280
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	12.1	0.9333
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	14.0	0.9060
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	15.7	0.9325

Compare expression of checked genes

Lus10035791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.