Plant FIBer expression Database

Lus10035796 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013986
[exp]
328 / 3e-106 ND 55 / 7e-08
Lus10007302
[exp]
320 / 1e-104 AT1G15680 49 / 4e-06 F-box family protein (.1)
Lus10013987
[exp]
330 / 3e-104 AT3G23950 59 / 1e-08 F-box family protein (.1)
Lus10040838
[exp]
306 / 8e-98 AT3G23950 57 / 2e-08 F-box family protein (.1)
Lus10003349
[exp]
310 / 9e-98 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2)
Lus10007303
[exp]
256 / 4e-81 AT3G23950 45 / 6e-05 F-box family protein (.1)
Lus10013907
[exp]
225 / 1e-68 ND /
Lus10016522
[exp]
229 / 3e-67 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1)
Lus10040816
[exp]
208 / 2e-61 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G004800
[exp]
94 / 2e-20 AT5G49610 65 / 3e-11 F-box family protein (.1)
Potri.011G000700
[exp]
89 / 1e-18 AT3G15910 58 / 5e-09 unknown protein
Potri.009G132400
[exp]
67 / 6e-12 ND /
Potri.005G043500
[exp]
54 / 1e-07 AT5G07610 135 / 7e-36 F-box family protein (.1)
Potri.013G109900
[exp]
51 / 1e-06 AT5G07610 61 / 7e-10 F-box family protein (.1)
Potri.018G132800
[exp]
51 / 1e-06 AT5G07610 158 / 1e-43 F-box family protein (.1)
Potri.013G110300
[exp]
51 / 1e-06 AT5G07610 54 / 7e-08 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Lus10035796 pacid=23147692 polypeptide=Lus10035796 locus=Lus10035796.g ID=Lus10035796.BGIv1.0 annot-version=v1.0
ATGATAAGCAGTCTGGGAGACGATCTTCTCGTAGAGATTTTGATTCGCCTCCCGAACCCTAGATTCGCCTCCCGCTGCAAACCCGTCAGCAAGCGGTGGT
GCTCCGTTATCTCTGATCCCTGCTTCAATCGGCGTTATGTTTCTCACCACCAACGACCTCCTCTGCTTCTTCCCTCAGACGACCCTCAATCGATCCTCCC
GGACATCCTCCCCATGCCTTGTGGTGTAGATAGACTGCGTTTCACAGTTTTGGATTCCTTCAAGGACTTGCTTTTATGCGGGTTTGCGTTGCGACAAGCT
CTTGATGCCGAATTCCGCAGATCCTACTTCATCTGCAATCTTTTTACAAAGCAGTGGATCGCACTTCCTTTGTCGTCAGAAAGGCCGTCAGGAGCGATTG
CAAGGTTAGTTTGTGAACCCATTGTTACCAACGAACTTGATCTAGGAGATGGCCAGACATCTGTTTATTCCGAGTGTCGATTCCGGGTGGTGTTGATATA
TAAATATAAGTCATCTGTAAAACTGGACTTGTTTTGTTCCGAGACTGGAGAATGGACCAAGGAGGCTCTTGTTCTTGATAATCATTGCAGATTGGATAGA
AAAAATGTAGTCTCTTGCAACGGGGAATTGTTTTGGGCGTATTTGCATCGTGGTGTAGATGGGGTTTATCGTCGGCTGATTGCTGCCTTCAACCCTTTCC
GCCCCGATATACCTCCCGCTTGTATTCGTGTTCCTGCAAATCTTGTGGAATCGAGATGGGATTTTTCCATCTCGCAAGGTTTTTTGTACGTAATTGTATA
CGAAAAGAAACCTCCTGCCCTTGGTTGTTCAGCGATTCGTTCGAGTGTTTGGAGACTGCAAAAACGCCGTATAAGTTGGAGGAAAATATGTGCAGGGTTG
TTGAAGACAACTCCGAGGAGTCTGCATCGGGAGAAGGCAGACATTGAATGGGAGGCTATCATGCTAAAACACTTCCCTGAAGAAAAGACATCAAGGTCTA
ACTATGACGTGGAGGGCCTTAGTTTTCCTTTTCTTCATCCGGAGAATCCGGAAATTATTTTCTTCCATTATTTTGCTCGTCATCTTGACACTTCTATCTT
GTCCTGTAATTTGAGGAGTGGGGAGCTAGAATTTTTCTCTAAACTAAGAATAATATATGCACCTCGGTGGGCAGCGTTCCTGGTTCAGATATCTTGCTGT
CCTACCCCAATTCCAGGGTATGACAAACTGAAAGTTTTGTACAACGGAAGCTACGGCTGTTGGGTCCAGAGCGACGAACCAACAACTTCCCCCATAACTG
GACCAACAACTCCCCCAATAACAGAAAAACGCCAACCAGTGGGCGGTGTTGAACATTCTGGTCATTGGAGGAAGAACAACAGCTCAGCATCAACCCCCAG
GCGTCTGTGTTATGATGCAGAAATTGATAAAAGGCTCAAGTCTTCGATTTCTGCCTTCTGGGAGGTGCTGCGACTGGACCCTTTCTGA
AA sequence
>Lus10035796 pacid=23147692 polypeptide=Lus10035796 locus=Lus10035796.g ID=Lus10035796.BGIv1.0 annot-version=v1.0
MISSLGDDLLVEILIRLPNPRFASRCKPVSKRWCSVISDPCFNRRYVSHHQRPPLLLPSDDPQSILPDILPMPCGVDRLRFTVLDSFKDLLLCGFALRQA
LDAEFRRSYFICNLFTKQWIALPLSSERPSGAIARLVCEPIVTNELDLGDGQTSVYSECRFRVVLIYKYKSSVKLDLFCSETGEWTKEALVLDNHCRLDR
KNVVSCNGELFWAYLHRGVDGVYRRLIAAFNPFRPDIPPACIRVPANLVESRWDFSISQGFLYVIVYEKKPPALGCSAIRSSVWRLQKRRISWRKICAGL
LKTTPRSLHREKADIEWEAIMLKHFPEEKTSRSNYDVEGLSFPFLHPENPEIIFFHYFARHLDTSILSCNLRSGELEFFSKLRIIYAPRWAAFLVQISCC
PTPIPGYDKLKVLYNGSYGCWVQSDEPTTSPITGPTTPPITEKRQPVGGVEHSGHWRKNNSSASTPRRLCYDAEIDKRLKSSISAFWEVLRLDPF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035796
[exp]
0 1
AT3G22440 FRIGIDA-like protein (.1) Lus10006113
[exp]
8.2 0.7316
AT2G47330 P-loop containing nucleoside t... Lus10011466
[exp]
15.7 0.7452
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10002880
[exp]
19.9 0.7073
AT4G04920 AtSFR6, SFR6 sensitive to freezing 6 (.1.2) Lus10011192
[exp]
23.2 0.7236
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10033962
[exp]
24.5 0.6994
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Lus10004353
[exp]
52.0 0.6939
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Lus10032193
[exp]
52.3 0.6872
AT3G13980 unknown protein Lus10037659
[exp]
56.9 0.6876
AT5G51920 Pyridoxal phosphate (PLP)-depe... Lus10038892
[exp]
61.4 0.6785
AT5G66820 unknown protein Lus10002968
[exp]
64.7 0.6805

Lus10035796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.