Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58025 114 / 2e-28 DNA-binding bromodomain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037368 [exp] 446 / 8e-156 AT1G58025 246 / 2e-74 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035792 [exp] 113 / 1e-31 ND / Lus10037367 [exp] 64 / 2e-11 AT1G47840 97 / 9e-29 hexokinase 3 (.1) Lus10036580 [exp] 63 / 1e-10 AT1G58025 147 / 4e-37 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035798 [exp] 48 / 8e-06 AT1G40087 101 / 1e-22 Plant transposase (Ptta/En/Spm family) (.1) Lus10035794 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223700 [exp] 162 / 2e-45 AT1G58025 295 / 3e-92 DNA-binding bromodomain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10035797 pacid=23147355 polypeptide=Lus10035797 locus=Lus10035797.g ID=Lus10035797.BGIv1.0 annot-version=v1.0 ATGGACTTCGGTACTATATGCAACAATCTGAAAAAGGATATCAAATATGTGGATTCAGAGGATGTCTACAAGGATGTGCAGTACATTTGGAATAACTGTT TCAAGTACAACAATAAAGGTGCTGAAGGTGTCCAAGAAGCAGAATCATTAAACCAGGGCAAGGCAAAATCTGGTCAACCAAAACAGAAGTCAAAAAAGCG TCATGGAAGACGCCACAAATCTGATTGTTTATGTGCCGTATGTGTTCTCAAGCGTCGTAGAAGGGAGCGTGAGGAGAATGCTCGTCAGACCGCAGGCCAG TCTGCTGATGAAGGAGCCTCCACAGAGATCAAGCAAGAGGGAGGATCACCTGTGGAAAGCCCCGGTGGAGAAGATTCGTCGTCAAACATAGCCGACTCAC CTGCTCTAGATACAGATGCAGAGGTGGATGGAACTGCACAAGATATCAAAATGGAGGAGAGCGATAATAAGCAGAACAATTCTCCTTCAGAGAAGTCTCA TGATGAAATGGAAGAGGATGAGGCGGAAGAGGAGGAAGACAAACAGGAACAAGCTGACGTATTAGAGAACTCACAGTTGGCTGATATGTCAGGAGAGCAA CTGAATGGAGAAGTCGATCCTCACGTTGTGAAATTCCCTGGAGCATCTGATGCTGAGAAGGAAAGCGTAGCAGTGCAACACGAAGGGAGTATGGCTGTTA AACAAAAAACTCATAAGTTGCAGGAGTTGGTTGAAACGCAAGAAAAGGCAATCATGTTTGATAAGTTTCGGAATGAAGATCCCACAGTTATGAGCCTGTG CACAAAACTGTTCCCGGACAACAATAAGTCAATATGGAACGGACCACATTCACTGTTTGGGTGTCACAATCCTACTCCAGTTCGGAGTAGTATTCACAGC GCTATTGAGATGTTGATGAAGTAG
AA sequence Show only first row Show all	>Lus10035797 pacid=23147355 polypeptide=Lus10035797 locus=Lus10035797.g ID=Lus10035797.BGIv1.0 annot-version=v1.0 MDFGTICNNLKKDIKYVDSEDVYKDVQYIWNNCFKYNNKGAEGVQEAESLNQGKAKSGQPKQKSKKRHGRRHKSDCLCAVCVLKRRRREREENARQTAGQ SADEGASTEIKQEGGSPVESPGGEDSSSNIADSPALDTDAEVDGTAQDIKMEESDNKQNNSPSEKSHDEMEEDEAEEEEDKQEQADVLENSQLADMSGEQ LNGEVDPHVVKFPGASDAEKESVAVQHEGSMAVKQKTHKLQELVETQEKAIMFDKFRNEDPTVMSLCTKLFPDNNKSIWNGPHSLFGCHNPTPVRSSIHS AIEMLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58025			DNA-binding bromodomain-contai...		Lus10035797 [exp]	0	1
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10019383 [exp]	4.9	0.6576
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	8.7	0.7304
					Lus10002077 [exp]	19.7	0.5871
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	46.7	0.6494
AT5G55060			unknown protein		Lus10000118 [exp]	48.7	0.6717
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	50.2	0.6249
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10019599 [exp]	56.3	0.6379
					Lus10011795 [exp]	56.9	0.6469
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	58.2	0.6673
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	61.1	0.6458

Compare expression of checked genes

Lus10035797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.