Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G40087 93 / 6e-20 Plant transposase (Ptta/En/Spm family) (.1) AT1G58025 89 / 7e-18 DNA-binding bromodomain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036580 [exp] 714 / 0 AT1G58025 147 / 4e-37 DNA-binding bromodomain-containing protein (.1.2.3) Lus10019632 [exp] 159 / 4e-42 AT1G40087 87 / 1e-18 Plant transposase (Ptta/En/Spm family) (.1) Lus10037368 [exp] 78 / 2e-14 AT1G58025 246 / 2e-74 DNA-binding bromodomain-containing protein (.1.2.3) Lus10024976 [exp] 56 / 8e-08 AT1G40087 91 / 5e-20 Plant transposase (Ptta/En/Spm family) (.1) Lus10035797 [exp] 48 / 2e-05 AT1G58025 162 / 1e-45 DNA-binding bromodomain-containing protein (.1.2.3) Lus10031094 [exp] 47 / 4e-05 ND 39 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223700 [exp] 92 / 4e-19 AT1G58025 295 / 3e-92 DNA-binding bromodomain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10035798 pacid=23147379 polypeptide=Lus10035798 locus=Lus10035798.g ID=Lus10035798.BGIv1.0 annot-version=v1.0 ATGAAAACCAAGCGGAAGCGTGGACGTCCTAAGACCAAGAATTTGGCTTCTGTTGCTGCTGCTTCACCAGAACATGATGCTCCCTCTGCTGAACCTGTTA CTGCTGCTGCTGAATCACCTCTCAGTGCGGCCGCAGCACTAAATGCTAATAAAGTGGCCTTCTTGAACCTTGTAGGCCAGATTGCTCAAGAAAATCTTGG ACTGGACAAATCTACTAATGATGCCGCTGCCCCACAGGGAATTCCTTCTTCCTCCAACCACTCTAGTTCATCAGCTTCTTCTTTCTCAACTATAGGGGAC GATTCATTCCGTGCAGATGATATTAACAGTAGGGTGGATGAGCAAGAATTGAACCTTATGCCAACTCAATCAGTAGGCCGTAAGCGTGGCCGTCCTAGCA AAAGGGACGTGACAAACGGTGCTAGCGATGTTCGGGTTACCTCTTCCAGTGGACTGTATCCTTGGAACAGCAAAGATAAGAGATCCAGGAAGTCATGTCA GGATCCCCGATACAATGAAAGAGAACTGAACATCGCCTTATCAGTCATTAAGAAGATCATGGAAATGGATGAAGCTGCATCATTCATTTCTCCTGTTGAT CCTGTCCCTTCTGGATTTAATCGTAGCAATGTCAAAGATACACCTATGGATTTTGGAACCATATGCAGCAATATTCAGGCTGGCTTCAAGTACCTAAATT CCTATGATGTCTATGTGGACGTGGAATGTATATGGGAGCACTGGCAACCTGATTTAGTGCATAGTAATGACCACATGATGGAGGACATCAATTATGAGGC TAGTTGTGCGGTGAATCCCGTTGGTATTAGAATCCAGAAGCAACCAGCACAGGCCACCCTTTCAAGCTACAATCAACAGGCGCAGGTCCCTTCATCAAGC TACAATCGCCAGGCGCAGGTGATTCCATCTAGCTACAGTCACCAGGCGCAGGTGCCTCCATCAAGCTACCGTCACCAGGTGCATGTGCCTCAATCAAGCT ACAGTCACCAGGCTCAGGTTCCTACATCAAGCTACAATCACCATGCTCAGGTTTCTCCATCAAGGTACAGTTACAATTATCAGTTGCCTCAACTGCAGCC AACCACGAGTTACTCACCACAAGCCCCCCAGTCGCAATCTAGAATCCATACCAACGATGCAGGACATTCTTATGCACCCTCCCAGGACTCTAAGAAGCAG AGGAGAAACTCACGTCAACTGTCAGTGGCTCCCACTTCAACCCATTCCAAGCATCCATCACAATCAAGTTCCTATTATGTGCGACATCCTGTACACAGTG CTAGCCAGCAACAACCATCTCAATTACTTGTTCAAGAGAATGATGACGGACATCAAGGTTGGATGCCTACCCGGAATGGTAATCTGGGACAAAATGGATT TATGTCCACAACTGCAGCTAACCCCAGTATCACCAACCAAAGCCAACTTCAACCACAGAAACCTCCTGTTAGCCGTAACCTGGAACATGTGTCAGATGTA CCCGAGGAAAGCATTAGACAGCACCAGCATCCTGAGCAGGTTGCTTTTACTTCACATGCAGGGGGTGTGTATGGCTTGGGGAAGAGTCAGAGAAAAGTTG TAAGGTGTTCCAAGGGTTATAGGTATACAATGGAAATTGCGTCCCCCTCTGTTAACCCACCCGAGCAGGATAATTATCAAGACCACAGCAGTCCATGCAG TTCAGAAGAGAACATAGTTTTCTCAAAGAGGCAAGGACGAGGCCCTAGCCGGTGTGGCTTTGTGTGGGACTTGCCTGAAGGTTGCAAATTGGCCATTCCC CTCAATGATCTGGGACAACCAGTTGGCACCGAAGGCAGAAAGTTCGCTTCATTTCTGGGCACATTGGCACGGGATGGTTCCCTGGCTCCTCTTACGTACG CAAAATGGTCTGCAATACCGCAGCCGTACAAAGAAACTATGTGGCGGATGGTTCAGGAAAAGTGTGACATTGATCCTATGATGAAAAAGTATGTCTTGAA GTCGATTTCTTGCAAGTGGAAGAGCTGGAGATCGAGGTTGAAAAAAGATTATTACTCTTACAAAACTGATGATGAGCGTATGAGGAATCTTGACAAAAGA GTGGTTCCAGATCAATGGCCAGCCCTCATAGAGTATTGGAACAAGGAAGAAGTGCAGTTACTATGTGCTAGGAATAAGGCCAATCGTGCTAATCTGAAAG ATAATCATCGCACCTCGGGCTCAAAGAGTTATGCAACCATACGAGAGGAAGAGCGGGCGAAAAGGCCTGACGGGAAGGCTCCTACTAGAGCTGAGATGTA TATACTGACCCATACAGACAAGGATGGAAATCCTGTGAATGAGGCAGCTGCAGAAGCAAAGCTGCGAGAAAAAGCTGCTGAGAGACAGCAAAATTCAGAA GCCAGTGGTAGTTCCCGTGACACCTTCTACGAAGCAATGGGCGAAGAGAAGAAAGGGCACGTACGTATGCATGGTCTGGGACCTAGCCCCGCTACTCTTT GGGGCAGAAAATGTGGGCGTATTCAGTTTTCAAGAATGGCAATGGAAGCCAAAAAACAAGCAAGTGAAGAGGCAGTCAAGGTATGCAGTAAAGTGGAGGT GTTGGAGCAGAAACATACATCAATGGAGAAGAAATTTGAATCGATGGAAGCTCAGATAGCTAGGATGAACTCAAACATGGAGCTCATGCTTGAGAAGTTG GGGGTACCAAAAGCATCAGGATCAGTAAAGCTAAACCAGGTAATAATAAATTGA
AA sequence Show only first row Show all	>Lus10035798 pacid=23147379 polypeptide=Lus10035798 locus=Lus10035798.g ID=Lus10035798.BGIv1.0 annot-version=v1.0 MKTKRKRGRPKTKNLASVAAASPEHDAPSAEPVTAAAESPLSAAAALNANKVAFLNLVGQIAQENLGLDKSTNDAAAPQGIPSSSNHSSSSASSFSTIGD DSFRADDINSRVDEQELNLMPTQSVGRKRGRPSKRDVTNGASDVRVTSSSGLYPWNSKDKRSRKSCQDPRYNERELNIALSVIKKIMEMDEAASFISPVD PVPSGFNRSNVKDTPMDFGTICSNIQAGFKYLNSYDVYVDVECIWEHWQPDLVHSNDHMMEDINYEASCAVNPVGIRIQKQPAQATLSSYNQQAQVPSSS YNRQAQVIPSSYSHQAQVPPSSYRHQVHVPQSSYSHQAQVPTSSYNHHAQVSPSRYSYNYQLPQLQPTTSYSPQAPQSQSRIHTNDAGHSYAPSQDSKKQ RRNSRQLSVAPTSTHSKHPSQSSSYYVRHPVHSASQQQPSQLLVQENDDGHQGWMPTRNGNLGQNGFMSTTAANPSITNQSQLQPQKPPVSRNLEHVSDV PEESIRQHQHPEQVAFTSHAGGVYGLGKSQRKVVRCSKGYRYTMEIASPSVNPPEQDNYQDHSSPCSSEENIVFSKRQGRGPSRCGFVWDLPEGCKLAIP LNDLGQPVGTEGRKFASFLGTLARDGSLAPLTYAKWSAIPQPYKETMWRMVQEKCDIDPMMKKYVLKSISCKWKSWRSRLKKDYYSYKTDDERMRNLDKR VVPDQWPALIEYWNKEEVQLLCARNKANRANLKDNHRTSGSKSYATIREEERAKRPDGKAPTRAEMYILTHTDKDGNPVNEAAAEAKLREKAAERQQNSE ASGSSRDTFYEAMGEEKKGHVRMHGLGPSPATLWGRKCGRIQFSRMAMEAKKQASEEAVKVCSKVEVLEQKHTSMEKKFESMEAQIARMNSNMELMLEKL GVPKASGSVKLNQVIIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	0	1
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	1.0	0.8989
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	2.4	0.8889
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	3.7	0.8954
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	4.9	0.8886
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	5.5	0.8820
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	5.7	0.8700
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	8.5	0.8752
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	8.9	0.8385
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	13.0	0.8763
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	15.5	0.8695

Compare expression of checked genes

Lus10035798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.