Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63690 191 / 1e-63 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036580 [exp] 165 / 2e-48 AT1G58025 147 / 4e-37 DNA-binding bromodomain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083500 [exp] 201 / 2e-67 AT5G63690 200 / 5e-67 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035799 pacid=23147673 polypeptide=Lus10035799 locus=Lus10035799.g ID=Lus10035799.BGIv1.0 annot-version=v1.0 ATGAACACAATTCAACTGAAAGACTTGGTGCCAGCTGCTCGGAACAACATAAACACAAAGTTCATACTGCTGGATAAGAGCAGGATGAGGATGGAAGGGG GGAGCAAGACGTGCTCGGCGTTGGTAGCTGACGAGACTGCAGCCGTGCATTTCCAGTTATGGGGTGAAGAGTGCGAGGCGTTTGAGGCTGGAGATATCAT CAGGCTGGAGAATGGGATATTTTCCAACAGCAGGAACAGCAAGGAGATGGTGCTGAGGGCAGGGAAGAGAGGGAACATTAAGAAGATTGGAGAGTTCACC ATGGCGTTTGTGGAGACACCCAATATGAGTGAGATTCAATGGGGCCTTGATCCTCACAATTCCAACAAGTTTGTGCAGCAAGCTGTTCTTTCTCCCCATT CTCGCGTCTTCCCTCCATTGCGTTAA
AA sequence Show only first row Show all	>Lus10035799 pacid=23147673 polypeptide=Lus10035799 locus=Lus10035799.g ID=Lus10035799.BGIv1.0 annot-version=v1.0 MNTIQLKDLVPAARNNINTKFILLDKSRMRMEGGSKTCSALVADETAAVHFQLWGEECEAFEAGDIIRLENGIFSNSRNSKEMVLRAGKRGNIKKIGEFT MAFVETPNMSEIQWGLDPHNSNKFVQQAVLSPHSRVFPPLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	0	1
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	2.6	0.7936
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	4.2	0.7815
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	6.0	0.7817
AT5G13470			unknown protein		Lus10005318 [exp]	7.9	0.7151
AT1G20580			Small nuclear ribonucleoprotei...		Lus10030747 [exp]	8.5	0.7505
AT1G73770			unknown protein		Lus10007968 [exp]	11.1	0.6373
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	12.6	0.7346
AT5G24165			unknown protein		Lus10014921 [exp]	14.1	0.7160
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	15.4	0.6696
AT5G44710			unknown protein		Lus10001221 [exp]	16.1	0.6806

Compare expression of checked genes

Lus10035799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.