Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 885 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 812 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 639 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT2G26980 279 / 2e-89 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 278 / 4e-88 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 276 / 7e-88 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT3G17510 269 / 1e-84 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT5G25110 265 / 1e-82 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G01140 262 / 7e-82 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 261 / 2e-81 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036582 [exp] 957 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 956 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10012696 [exp] 926 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 266 / 2e-83 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 265 / 7e-83 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 262 / 6e-82 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 262 / 7e-82 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10024448 [exp] 260 / 5e-81 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 256 / 2e-79 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115900 [exp] 941 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 926 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 717 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 279 / 1e-88 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 272 / 8e-86 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 269 / 8e-85 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.014G104200 [exp] 268 / 4e-84 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 264 / 1e-82 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 264 / 1e-82 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G263500 [exp] 261 / 1e-81 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0573 [flax] [poplar] KA1-like PF02149 [flax] [poplar] KA1 Kinase associated domain 1 CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10035801 pacid=23147613 polypeptide=Lus10035801 locus=Lus10035801.g ID=Lus10035801.BGIv1.0 annot-version=v1.0 ATGGATGGATCGTCGCACCGGGGCAATAGTGTGGATATGTTCTTATCCAATTACAAGCTTGGTAAAACTCTAGGAATTGGTTCCTTTGGTAAAGTGAAAA TTGCTGAACATGCATTGACTGGACATAAAGTTGCCATCAAGATTCTTAATCGCCGTAAGATTAAAAATATGGAGATGGAAGAAAAAGTGAGGCGAGAAAT CAAAATCTTAAGATTGTTTATGCATCCCCATATCATACGCTTGTACGAGGTTATTGAAACACCAACTGATATCTTCGTGGTCATGGAGTATGTTAAATCT GGGGAACTGTTTGATTATATTGTGGAGAAAGGGAGGTTACAGGAAGACGAGGCCCGCAATTTTTTCCAGCAGATAATTTCTGGCGTTGAATACTGCCACA GGAATATGGTTGTTCCCCGAGACCTAAAACCTGAGAATTTACGAGACCTAAAGCCTGAGAATTTACTTTTGGATTCTAAATGTAATGTCAAGATAGCTGA TTTTGGACTGAGCAATATAATGAGAGATGGTCACTTTCTGAAGACAAGTTGTGGAAGTCCAAACTATGCCGCCCCAGAGGTCATCTCTGGGAAATTATAT GCTGGCCCTGAAGTGGATGTGTGGAGTTGTGGTGTTATATTGTACGCTCTTCTTTGTGGTACCCTCCCATTTGATGATGAAAACATTCCCAACCTTTTTA AGAAAATAAAGGGAGGAATATACACTCTTCCTAGTCATTTATCACCCGGGGCAAGAGATCTTATTCCTAGGATGCTTGTGGTTGATCCAATGAAGCGAAT GACCATTCCTGAAATTCGTCAGCATCCATGGTTCCAAGCTCGTCTCCCGCGTTATTTGGCTGTGCCTCCACCAGACACAATGCAACAAGCTAAAAAGATT GATGAAGAGATTCTACAAGAAGTTATTAAAATGGGATTTGACAGGAATCAACTTGTTGAATCACTTCGCAACAGAATACAGAATGAGGGTACCGTGGCAT ACTATTTGCTCTTGGATAACAGGTTCCGCGTCTCTAATGGTTATCTTGGTGCGGAGTTTCAAGAGACTATGGAATGTGGTTACAACCGTATGCATCCTAG TGAGCCTGTTTCTCCATCTGTTGGGCATCGGGCCCCTGGGTACATGGAGTATCAAGGCATGGGATTAAGATCACAATATCCTGTTGATAGGAAATGGGCA CTTGGACTTCAGTCTCGAGCCCATCCACGTGAAATCATGACAGAAGTTCTCAAAGCTTTGCAAGAACTGAACGTCGGGTGGAAGAAGATTGGTCACTATA ACATGAAGTGCAGGTGGATTCCTGGGAGCCCTGGACAGCATGAAGGGATGGTAAATGATTCAGTGCCGAATAATCATTTCTTCGGGGATGAATCTGCTAT TATTGAGAATGACGGAGGGGCCAGAACACCAAATGTTGTGAAATTTGAAGTCCAGCTATACAAAACGAGGGAGGAAAAATACTTGCTGGATCTGCAGAGA GTACAGGGACCGCAGTTCCTGTTCTTGGACCTCTGTGCAGCTTTCCTGGCGCAGCTACGAGTGCTTTAG
AA sequence Show only first row Show all	>Lus10035801 pacid=23147613 polypeptide=Lus10035801 locus=Lus10035801.g ID=Lus10035801.BGIv1.0 annot-version=v1.0 MDGSSHRGNSVDMFLSNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIFVVMEYVKS GELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVPRDLKPENLRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLY AGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKI DEEILQEVIKMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSNGYLGAEFQETMECGYNRMHPSEPVSPSVGHRAPGYMEYQGMGLRSQYPVDRKWA LGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCRWIPGSPGQHEGMVNDSVPNNHFFGDESAIIENDGGARTPNVVKFEVQLYKTREEKYLLDLQR VQGPQFLFLDLCAAFLAQLRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10035801 [exp]	0	1
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	11.2	0.7494
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	12.4	0.7159
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	12.5	0.7872
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	18.5	0.7585
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	27.2	0.7405
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10040844 [exp]	28.6	0.7110
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	31.1	0.7210
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	31.7	0.7578
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	34.2	0.7412
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	39.4	0.6814

Compare expression of checked genes

Lus10035801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.