Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29635 265 / 8e-83 HXXXD-type acyl-transferase family protein (.1) AT3G29590 263 / 2e-82 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39050 256 / 2e-79 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29670 254 / 1e-78 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39080 251 / 2e-77 HXXXD-type acyl-transferase family protein (.1) AT5G61160 240 / 2e-73 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 228 / 1e-68 HXXXD-type acyl-transferase family protein (.1) AT5G39090 227 / 2e-68 HXXXD-type acyl-transferase family protein (.1) AT1G03495 209 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT1G03940 205 / 5e-60 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020721 [exp] 669 / 0 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10036582 [exp] 567 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10033599 [exp] 564 / 0 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 352 / 4e-116 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 340 / 6e-112 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 323 / 4e-105 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 321 / 2e-104 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 298 / 3e-95 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 294 / 6e-94 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 364 / 5e-121 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 360 / 1e-119 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 355 / 9e-118 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 339 / 2e-111 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 338 / 3e-111 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 338 / 6e-111 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 337 / 3e-110 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 336 / 3e-110 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 332 / 1e-108 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 323 / 3e-105 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035802 pacid=23147540 polypeptide=Lus10035802 locus=Lus10035802.g ID=Lus10035802.BGIv1.0 annot-version=v1.0 ATGCTCAGTCAGAATGTAGTAAATGATATCAAACAATCGTCGCCGCCGGAGCGTCACCCTCCGGCCCCGCTTTCTCGTCACTCGGCGCTAATGGAGCATT CATTTAAAGAGCAAACTGTGTCGAAATTCAATATTCAAACCTACAGAACCTTTTTCTTTCATCTCCCTTGCCTTTTCATGGCTTCCGCAGCGACGGTCAA AGTCCTCGGCGTTCTCAAAGTGACTCCGGAACCGCCGCCGGCCAATCCATTCTCCCTTGCTCTAACCTTCTTCGACGCTCTGTGGATCAAATTTCCCCCG GTAGAGTCCATCTTTCTGTACCAAGTCCCTAATTTATCACCGGAGTCATTCAGATCACAACTCCTTCCTAAACTTCGCCGCTCTCTGTCGCTCACTCTGC ACTACTTCCTCCCTCTCGCCGGGGCCGTCACCTGGCCTTTCTCAGACTCCGACGCTGCCCTCCCCATCATCCTCTATACCCCAGGAGACGCCGTTTCCTT CACCGTAGCCGAGTCCACCGGCGACTTTGATCATATCACCAGCGACCGGGTTCGCCAAGCTTCCGATTCGTTCGATTACATAGCGGAGTTACCTGTGTCC TGTTCGTCCGCGACGATTCTGTCTCTGCAGATCACTCTTTTTCCCGGCGCTGGATTTTGTATCGGCGTATCTGCTCACCACGGGGTTGTCGACGGTGAAA CGCAAGCAATGTTCATGAAAGCTTGGGCTTATACTTGCAGGCAGATCGGAGATGAGGAAATCGAATTGCCGCAGGCACTCACTCCAGTCTTCGATCGGAC ACGGATCGCTGATAATTCAGATGAAATTGCGTTGGAGTACTGGAACAATTGGTTCCAACTCCAACAGAAACTTGCAGGTACGGATCCGAATCCGAATCCT AGAAGCTTGGAGCCGTTGTGGAGTTTGGTAGATAGAGAATCCAATAGAATGCTGCGAGCGACGTTCCACTTCTCCAGGGAGAGGATCAACAAACTGAAAA AGGAATTGATTAAGAAAATAACAAACCCTAATTATTTGTCGAGCTTCGTCATCACTCTGGCGCACACCGCGGTTTGCATCGTGAAGGCGAAAAGGGCAAC ACAAGTCAGAGGCGATGACGACACGACGTTCCAGCTCGCGTTCACGGCGGATTTTAGGTCCCGATTGGAACCTCCGCCGCCGGATAATTTCTTCGGCAAC TGCGTGTCCCCTTTCGAGGTGCTGCTGAGGGCGGCGGCTGAAGGCGGAGGCACTGCGTATGCGGCGGGGAAGATCATAGAAACGATCAAGGAGGTGGAGA AAGGAGTGATGGTGGGAGCGAAGGAGAGGCTGGCTAATTTGCTGTTTACGGATGAATTTGAGCTTGCAATTGGGGTGGCGGGGTCGCCGAGGCTGGGGAT GTATGGAGTTGATTTCGGGAACGGAAGGGCGGCGAAGGTTGAGATCACGTCGACGGCGAGGACAGGAGCTATTTCGATGACGGAGAGTAGAGACGGGAGC GGCGGAGTTGAGGTAGGGGTTGTGTTGAAGCAGGAAGAGATGGATGTATTTTGTCGTGCGTTCACTGGCAGAGCGGGAAAATGCAACCTCTAG
AA sequence Show only first row Show all	>Lus10035802 pacid=23147540 polypeptide=Lus10035802 locus=Lus10035802.g ID=Lus10035802.BGIv1.0 annot-version=v1.0 MLSQNVVNDIKQSSPPERHPPAPLSRHSALMEHSFKEQTVSKFNIQTYRTFFFHLPCLFMASAATVKVLGVLKVTPEPPPANPFSLALTFFDALWIKFPP VESIFLYQVPNLSPESFRSQLLPKLRRSLSLTLHYFLPLAGAVTWPFSDSDAALPIILYTPGDAVSFTVAESTGDFDHITSDRVRQASDSFDYIAELPVS CSSATILSLQITLFPGAGFCIGVSAHHGVVDGETQAMFMKAWAYTCRQIGDEEIELPQALTPVFDRTRIADNSDEIALEYWNNWFQLQQKLAGTDPNPNP RSLEPLWSLVDRESNRMLRATFHFSRERINKLKKELIKKITNPNYLSSFVITLAHTAVCIVKAKRATQVRGDDDTTFQLAFTADFRSRLEPPPPDNFFGN CVSPFEVLLRAAAEGGGTAYAAGKIIETIKEVEKGVMVGAKERLANLLFTDEFELAIGVAGSPRLGMYGVDFGNGRAAKVEITSTARTGAISMTESRDGS GGVEVGVVLKQEEMDVFCRAFTGRAGKCNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	6.6	0.8186
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	7.0	0.7595
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	7.7	0.7763
AT4G04980			unknown protein		Lus10018473 [exp]	8.9	0.7550
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	10.2	0.7096
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	10.4	0.7661
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	11.1	0.7980
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	13.8	0.7205
AT3G57500			unknown protein		Lus10012197 [exp]	14.1	0.6812
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	17.5	0.7275

Compare expression of checked genes

Lus10035802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.