Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78560 213 / 6e-65 Sodium Bile acid symporter family (.1) AT2G26900 210 / 1e-63 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT4G22840 151 / 2e-41 Sodium Bile acid symporter family (.1) AT4G12030 150 / 3e-41 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT3G25410 136 / 1e-35 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036583 [exp] 711 / 0 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 213 / 8e-65 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 215 / 4e-62 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10006672 [exp] 204 / 3e-61 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10007016 [exp] 202 / 2e-60 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10038237 [exp] 141 / 2e-37 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 139 / 1e-36 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 130 / 8e-33 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10008914 [exp] 125 / 4e-31 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008700 [exp] 494 / 3e-174 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 222 / 2e-68 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 208 / 9e-63 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.014G178000 [exp] 150 / 4e-41 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 144 / 1e-38 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.017G069350 [exp] 63 / 2e-11 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10035803 pacid=23147653 polypeptide=Lus10035803 locus=Lus10035803.g ID=Lus10035803.BGIv1.0 annot-version=v1.0 ATGTCTATATCGCTCCTTCTCACGCCCTGTACCACACTTCCCTTCAGGAATGACTCCCGCAGGAGCATCGCACTTCCAAACCCCCAATCCCTCATCGCCA TTTCTCAACCACCAATCAGGAAGTTGGAAATAATGTCCTCTAGGTTGAGAGCAGCAGTCGGCGATGGATCCGGGGAGCAGCTGAAGCAAAAAGAAGAAGC ACCCAGATGGGGAAATATGCTGTCCACGGCAGCAAGCTTGTACCCTTTCTATGTAACCATGGGTGGGATCGTGGCTTGCTTAAAGCCCGCCGCTTTCTCT TGGTTCGTCGGCAGTGCCCCTGCTTCTTACAGCTTCTCCCTTGCCTTGATCATGTTGTCCATGGGTCTCACTCTTCAGCTCAAGGACTTGCTGCGCTTGT TTATGCAGCGACCCCTCTCCATACTATTTGGATGTGCTGCTCAGTATACAATTATGCCAGCATTGGGATTGCTTATCAGCAAATGCTTGGGACTTTCCCC TTCCCTTTCAGTAGGGCTGATCTTGCTTGGGTGTTGCCCTGGTGGAACTGCATCCAATGTGGTGACCTTAATCGCAGAAGGGGATGTTGCACTATCTATT GTAATGACAGTATGCACTACTCTTGGTGCAGTGCTACTCACCCCACTCTTGACCAAGATTCTTGTCGGAGCTTTTGTCCCTGTTGACGCTCTCAAGCTGT CCATCAGCACTTTACAGGTGGTTGTTGCTCCAATAGTGCTAGGTTCATATCTGCAGAGTGCATTTCCTGCAGCGGTGAGAAGGGTGACTCCTTTCTCTCC TCTATTTGCTGTCTTACTATCATCACTACTTGCCTGCAGTGTATTCTCGGAGAATGTAATTCGTCTTAAATCCACAATGACCAATGCAACATTGGCATCA GATGCATCCTTCGTTCTACGCATCAAATCGACCCTCTCTGGAGATTTAGGAACCATTTTGCTCTCAGTTGTATTGTTGCATCTGGCTGGATTTTTTGTAG GTTATTTCTCAGCTGCCACTGGAGGGTTTAAGGAACGACAAAGGCGCGCAATAGCAATCGAGGTTGGGATGCAAAATTCATCACTGGGAGTAGTACTAGC GACGGCTCATTTCAGTTCATCAATGGTGGCATTACCTCCAGCAGTGTCGGCGGTGGTTATGAACATCATGGGTAGCAGTCTTGGCTTCATCTGGAAACAC ATGGACCCTTCTTCTGATGATGATAATGGTGATGCTGGGAATCAACTCGTACAAGAACAGGAGGGATCAACATAA
AA sequence Show only first row Show all	>Lus10035803 pacid=23147653 polypeptide=Lus10035803 locus=Lus10035803.g ID=Lus10035803.BGIv1.0 annot-version=v1.0 MSISLLLTPCTTLPFRNDSRRSIALPNPQSLIAISQPPIRKLEIMSSRLRAAVGDGSGEQLKQKEEAPRWGNMLSTAASLYPFYVTMGGIVACLKPAAFS WFVGSAPASYSFSLALIMLSMGLTLQLKDLLRLFMQRPLSILFGCAAQYTIMPALGLLISKCLGLSPSLSVGLILLGCCPGGTASNVVTLIAEGDVALSI VMTVCTTLGAVLLTPLLTKILVGAFVPVDALKLSISTLQVVVAPIVLGSYLQSAFPAAVRRVTPFSPLFAVLLSSLLACSVFSENVIRLKSTMTNATLAS DASFVLRIKSTLSGDLGTILLSVVLLHLAGFFVGYFSAATGGFKERQRRAIAIEVGMQNSSLGVVLATAHFSSSMVALPPAVSAVVMNIMGSSLGFIWKH MDPSSDDDNGDAGNQLVQEQEGST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	0	1
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	5.3	0.7526
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	5.5	0.7679
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	11.0	0.7305
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	11.2	0.6911
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	13.6	0.7598
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	23.2	0.7231
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	24.2	0.7456
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	25.1	0.6864
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	26.2	0.6717
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10038314 [exp]	33.2	0.7493

Compare expression of checked genes

Lus10035803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.