Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20900 52 / 4e-08 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT3G17860 54 / 5e-08 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G74950 51 / 2e-07 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G19180 49 / 8e-07 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G70700 48 / 2e-06 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G43440 47 / 6e-06 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT4G14720 45 / 3e-05 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 45 / 4e-05 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G13220 44 / 5e-05 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G48500 42 / 0.0002 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036584 [exp] 322 / 9e-111 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 52 / 2e-07 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10002576 [exp] 42 / 0.0002 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10014700 [exp] 42 / 0.0005 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10017991 [exp] 41 / 0.0008 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 41 / 0.001 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047100 [exp] 57 / 1e-09 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G217200 [exp] 56 / 3e-09 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 52 / 9e-08 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.001G062500 [exp] 49 / 6e-07 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.010G108200 [exp] 50 / 7e-07 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 49 / 1e-06 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 46 / 1e-05 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 41 / 0.0006 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10035804 pacid=23147693 polypeptide=Lus10035804 locus=Lus10035804.g ID=Lus10035804.BGIv1.0 annot-version=v1.0 ATGGAGATGTCGTCAAGCTTGAAGGATAGAGGTCGAAGGATTAAGGAGGAAAGGTTGGATGAAGGATATCTCAAGTTATTCGGGGAGAAAGTATCGTCAT CGACCAGAAACGGCGATGGTCATGGTAATGGTGATGATGGTATGTGCATTAATAAGAACAAGGTCGTTGCTGGCGAGGAGAGTAGTAAGGTGGCGGAGAT GACCGGTTACAGTAGAGGGCTGAAGCAATTCTTGATGATGAACCGCCGCCGACGACAAGCTTCCGTTCTAGAACGCCAGATCCTTCCTGGGATCATCAGT AAGAGTACTCCAGGAGGAAAGGTGGGTGGCGGTGATCAGTGTAGTAAAGCAATATCATCACAGCCACAGCTGACCATATTCTATTCCGGAATGGTTAATG TCTTCGACAACATTCCACCTGAAAAGGTAGAAGCCATGGTTTTGTTAGCTCGAGAGAGCTGCTCATCAAAGAGTAAAGAATCAGAAGTAGTGGTTCATAA TAATAATAATGAACCCACAAAGTTGAAGAATAAACCTCTTCCTTTTCCTGATGGATCCCGATTCAGACTTCCAGTTGCAAGGAAAATCTCACTGCAGCAT TTCATGGAGAAACGACGCCTTAGGATCACCAGCAAATCTCCCTATGACCCTCCTCCCAATAATCCAAAACTAAAGCATGTTATTATGGAAGAAGAAGAAG AAGAAGAAGAAGATAAGGGTAAGAATGTTGGTAATGGCGGAGGGTCAGATGATGGTGATGATGATCCCATTGTTTCACTTTCTCCATTTCCTTCTCGTTC AAGGTATTTCTTGTCGCTAACGTCGGCAGCCCCGGCCGCCGACGAAGCTTGTCAAGGCATGAGTTAA
AA sequence Show only first row Show all	>Lus10035804 pacid=23147693 polypeptide=Lus10035804 locus=Lus10035804.g ID=Lus10035804.BGIv1.0 annot-version=v1.0 MEMSSSLKDRGRRIKEERLDEGYLKLFGEKVSSSTRNGDGHGNGDDGMCINKNKVVAGEESSKVAEMTGYSRGLKQFLMMNRRRRQASVLERQILPGIIS KSTPGGKVGGGDQCSKAISSQPQLTIFYSGMVNVFDNIPPEKVEAMVLLARESCSSKSKESEVVVHNNNNEPTKLKNKPLPFPDGSRFRLPVARKISLQH FMEKRRLRITSKSPYDPPPNNPKLKHVIMEEEEEEEEDKGKNVGNGGGSDDGDDDPIVSLSPFPSRSRYFLSLTSAAPAADEACQGMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10035804 [exp]	0	1
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	125.5	0.5117

Compare expression of checked genes

Lus10035804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.