Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 1138 / 0 unknown protein AT5G02940 185 / 3e-48 Protein of unknown function (DUF1012) (.1) AT5G43745 181 / 5e-47 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036585 [exp] 1615 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10013455 [exp] 993 / 0 AT5G49960 936 / 0.0 unknown protein Lus10041014 [exp] 793 / 0 AT5G49960 749 / 0.0 unknown protein Lus10041011 [exp] 646 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 182 / 1e-47 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1) Lus10035800 [exp] 57 / 1e-09 AT5G48580 127 / 1e-38 FK506- and rapamycin-binding protein 15 kD-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008800 [exp] 1392 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 1338 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.019G097000 [exp] 993 / 0 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 988 / 0 AT5G49960 927 / 0.0 unknown protein Potri.008G160700 [exp] 187 / 7e-49 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 187 / 1e-48 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10035805 pacid=23147453 polypeptide=Lus10035805 locus=Lus10035805.g ID=Lus10035805.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGCAACGATGATCCTGCTCAGGGCTCCAAGAAAGCGGAGGAGTGGCCGCCGCTTCTCAAGAAATCCAAGACTACTTCAATCTCCGATCAAA CTCATTTCCCTGGTCCACTCTTCCCAGCTGTTCGCCGCGCCTCTTCTATTCCAGCTGCAACTTCCTCCACCATCACTACTTCTCACCTCCGCCCTCAGCT CCCGGATCTTCGCGTCTCTGTCGGCAACAACTCCGATCCGCCTTCTACTTCAGCAGCTTTCAGTAGTAACAGCAGCAGCAATATTAGCAGCGGAAGCAAT AGTTTAGGAAGCTTTAATGGAAGCGCTTTTGCGGATCGGGACTGGATGTACCCTTCGTTTCTCGGCCCGCACGTGACCAGGAATCGCGTTACTGTCAAAG GACGCCGTACAGCTGCCGCCGCCGGAGTGCAGGCGACTACTTCGGCGGATAAGCTAGGGAATGAAACTCTTTCCGGTAGTGGATTGAGGGAGGGAAGAGG ACAGAGTAACAGTACCAAATTGAAGGTAGAAAGTAAGGACGCTGGGGCGAGTCGAGCGCAGGCTAGTGCTCCGGCGACTCAGTCTGAAACGAGGAGGAGG GTTTTCGAGTCCAAGCATCCGTTCGTCTATTATTTGCTCCTTTTTACCTGTACATTCTCAGTATCTTATTCAATTCATCTGCGGAATGAACTCGGAAGGG TAGAGGCAGCGAATTTTAACCTCCGTAAAGTGTGTAGGGACAAAGATGTTGTTGGTAATGACGGCATCGAAGTTTTGCAGGCTGAAGATAGCTTGTTTTA TTTCGGGAATGCTGACAGTAGAACTCTTGCTTTGTATACTGTGATCGTCACTCTCCTTCTTCCATTTGCGTTCTACAAATGCCTTGATCGTCTTCCGCAA TTGAAGACCATCTTAAACAGAACAAAGAATAACAAGGAGGAGGTTCCTTTGAAGAAGAGAATTGCTTATAGGGTGGATGTTTGTTTTTCTATCTATCCCT ATGCAAAGCTGCTTGCCCTCCTATTCGCAACCATCTTCCTCATATGTTTTGGCGGGTTGGCATTATATGCGGTCAGTGATGGGAGCTTCACTGATGCTCT TTGGCTTTCGTGGACATTTGTTGCGGACTCAGGAAATCATGCTGATAGAGTCGGCACAGGGCCAAGGATAGTTTCTGTCTCTATAAGCTCCGGGGGAATG CTGATCTTTGCCATGATGCTTGGACTTGTCTCAGATGCTATTTCAGAGAAGGTGGATTCTCTTAGGAAAGGGAAAAGTGAAGTCATTGAAAAAGATCATA TATTAATTCTTGGATGGAGTGACAAGTTGGGCTCACTTTTGAAGCAATTGGCGATAGCAAACAAGAGTATTGGCGGTGGTGTCGTCGTCGTGTTAGCTGA AAGGGACAAGGAAGAAATGGAGTTAGATATAGCAAAACTGGAATTTGACTTCATGGGAACTTCAGTTATATGCAGAAGCGGCAGTCCTCTTATCCTGGCT GACCTAAAGAAGGTTTCAGTGTCAAAGGCCCGTGCAATAATAGTGTTAGCATCTGATGAAAATGCAGATCAGAGCGATGCACGTGCGTTGAGGGTTGTGC TCAGCTTGACTGGAGTTAGAGAAGGGTTGAGGGGTCATGTTGTTGTAGAGATGAGTGACTTGGATAATGAACCTCTAGTGAAGCTTGTTGGTGGGGACTT GATTGAAACAGTTGTTGCTCATGATGTCATCGGTCGTTTGATGATCCAATGTGCTTTGCAACCAGGTCTTGCACAGATTTGGGAAGATATATTGGGTTTT GAGAATGCAGAGTTTTACATCCAACGATGGCCCGAGCTTGATGGTATGTTGTTTGAAGATGTGCTCATCTCGTTTCCTGATGCAATTCCTTGTGGAGTTA AGGTTGCTGCAGAAGGTGGCAAGATAAACATAAATCCAGATGATAACTATGTTTTGCGAGAAGGTGATGAAATCCTAGTCATAGCTGAAGATGATGACAC GTATGCTCCTGGTCCTCTGCCAGAGGTGCGTAGAGGATTTTTCCCAAAGATACATGATCCTCCAAAATATCCTGAAAAGATTTTGTTCTGTGGTTGGCGC CGAGACATTGATGATATGATAATGGTTTTAGAGGCTTTCCTGGCTCCAGGTTCAGAATTGTGGATGTTTAATGAGGTTCACGAGAAAGAAAGAGAAAAAA AGCTTATTGATGGTGGACTCGACATTTCCGGACTAGAAAACATAAAACTTGTTCACCGTGTGGGGAATGCTGTCATTAGAAGGCATTTGGAGAGTCTTCC ACTAGAGACTTTTGATTCTGAACAGATATTAATTCTTGCAGACGAGTCATTGGAGGATTCCATTGTTCAGTCTGATTCAAGATCTCTTGCAACCCTGCTT CTGATCCGGGACATACAGTCGAAGAGGCTTCCATACAAAGACAAAAAGACGACATCTTTACGGCTTTCAGGGTTCTCTCACAGCTCCTGGATACGGGAAA TGCAGCAAGCTTCTGACAAGTCCATAATCATCAGCGAAATCCTGGATTCCAGGACAAGAAACTTGGTGTCGGTTTCGAGAATCAGCGACTATGTGCTGTC GAATGAGCTGGTCAGTATGGCGCTTGCAATGGTTGCTGAAGACAAGCAAATCAATCGCGTTCTGGAGGAACTGTTTGCAGAGGAGGGGAATGAGATGTGC ATAAAGCCAGCAGAGTTCTACCTGTACGACCAAGAGGAGATATGCTTTTACGACATAATGCTGAGGGGTCGGCAGAGGCGAGAGATAGTAATCGGATATC GGCTTGTGAACACGGAACGTGCCATAATGAACCCTCAAGGCAAGTCGGCACTCAGGAAATGGTCCGTGGATGATGTCTTCGTCGTCATTTCATTGGGTGA ATGA
AA sequence Show only first row Show all	>Lus10035805 pacid=23147453 polypeptide=Lus10035805 locus=Lus10035805.g ID=Lus10035805.BGIv1.0 annot-version=v1.0 MAQSNDDPAQGSKKAEEWPPLLKKSKTTSISDQTHFPGPLFPAVRRASSIPAATSSTITTSHLRPQLPDLRVSVGNNSDPPSTSAAFSSNSSSNISSGSN SLGSFNGSAFADRDWMYPSFLGPHVTRNRVTVKGRRTAAAAGVQATTSADKLGNETLSGSGLREGRGQSNSTKLKVESKDAGASRAQASAPATQSETRRR VFESKHPFVYYLLLFTCTFSVSYSIHLRNELGRVEAANFNLRKVCRDKDVVGNDGIEVLQAEDSLFYFGNADSRTLALYTVIVTLLLPFAFYKCLDRLPQ LKTILNRTKNNKEEVPLKKRIAYRVDVCFSIYPYAKLLALLFATIFLICFGGLALYAVSDGSFTDALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGM LIFAMMLGLVSDAISEKVDSLRKGKSEVIEKDHILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERDKEEMELDIAKLEFDFMGTSVICRSGSPLILA DLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVREGLRGHVVVEMSDLDNEPLVKLVGGDLIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF ENAEFYIQRWPELDGMLFEDVLISFPDAIPCGVKVAAEGGKININPDDNYVLREGDEILVIAEDDDTYAPGPLPEVRRGFFPKIHDPPKYPEKILFCGWR RDIDDMIMVLEAFLAPGSELWMFNEVHEKEREKKLIDGGLDISGLENIKLVHRVGNAVIRRHLESLPLETFDSEQILILADESLEDSIVQSDSRSLATLL LIRDIQSKRLPYKDKKTTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMC IKPAEFYLYDQEEICFYDIMLRGRQRREIVIGYRLVNTERAIMNPQGKSALRKWSVDDVFVVISLGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49960			unknown protein		Lus10035805 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	2.0	0.9446
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	2.0	0.9441
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	4.2	0.9310
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	6.0	0.9418
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	6.3	0.9392
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	6.5	0.9366
AT1G71740			unknown protein		Lus10042773 [exp]	6.5	0.9377
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	8.0	0.9335
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	8.4	0.9381
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10030143 [exp]	9.2	0.8889

Compare expression of checked genes

Lus10035805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.