Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 276 / 5e-89 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 240 / 3e-75 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 75 / 7e-15 esterase/lipase/thioesterase family protein (.1) AT2G03140 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036590 [exp] 439 / 3e-152 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 373 / 2e-126 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035744 [exp] 372 / 8e-126 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 370 / 5e-125 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 363 / 3e-122 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 173 / 4e-53 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10017332 [exp] 73 / 5e-14 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10001673 [exp] 73 / 5e-14 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 295 / 1e-95 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 226 / 1e-69 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 85 / 4e-18 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 55 / 5e-08 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035807 pacid=23147402 polypeptide=Lus10035807 locus=Lus10035807.g ID=Lus10035807.BGIv1.0 annot-version=v1.0 ATGTACATTGATTCTTTCAGTTCCGGCGGGACAGAAGACTCGAGGAGTATCATTGAGCATATCCATCATGAATATCCAAATGCTTTTACGATATTTGATA GGTTTATCAACCGAAAATTTGTGCAAAAACTTTATGACAAGGCACTTGGGGCTGGACTCGTAGCTATTCTGATGAACCGTCTTACCCAATCACTCATGTA CTCCGGGCATCAGACTATCGCATCTCAGCTTACAGACTGGAATAGCATTGCCAAGACACGCTCTATCCGGGACTTCGATAACTATTTCACTTGTGTTATT GAGAAATTCGAGACAGTGGACACATATTACAGACGTTCAAGCTCTGTTAACTATGTGGGAAATGTAGCAGTACCCCTTCTTTGCATCAGTGCCTTAGATG ACCCTGTTTGTACTAGGGAATCTATTCCATGGGAGGAATGCAGGATGAATCCAAATATTGTGTTGGCTGCAACAGAACATGGAGGCCACCTAGCTTACCA TGAAGGAATTACCGCAAGTAACATGTGGTGGGTGAGAGCTGCTAGTGAATTCCGCGAGGTGTTGCGGTCTAGGCCGTTAAAGGACCTGGCGAAAAAGGTG GAACCATCTAACACAAGCACTCCATTGGAATCGAAAATCGACCAGGGACCGTTTGTCAACATAGAAGATGATGGACCGGCAGATGCAGTTGCTGGCATCC ACAAAGACGATACAACAGCAGCAACAGATGACACTAGCAACGTGGACCGTACTGGCAAGGAGGACAGTGAGGAAGAAGAAAGCAGCAAGGATGTGGCGAC TTCCAAGAAAATGGATCCCGGAAATAATCCTGATCAAACATCCATCTGGCTTCTTGCTTACATAGCCATCACAACAACTTGGCCCTTGTTGGGTTCTGGA CTTCTTTTCTACCTCAAGCAAAAATGGCGTAGAACTTCAGGCGACCAGCTGTGTCTTGCAGATATCATTAAGGCTGTTGACTGA
AA sequence Show only first row Show all	>Lus10035807 pacid=23147402 polypeptide=Lus10035807 locus=Lus10035807.g ID=Lus10035807.BGIv1.0 annot-version=v1.0 MYIDSFSSGGTEDSRSIIEHIHHEYPNAFTIFDRFINRKFVQKLYDKALGAGLVAILMNRLTQSLMYSGHQTIASQLTDWNSIAKTRSIRDFDNYFTCVI EKFETVDTYYRRSSSVNYVGNVAVPLLCISALDDPVCTRESIPWEECRMNPNIVLAATEHGGHLAYHEGITASNMWWVRAASEFREVLRSRPLKDLAKKV EPSNTSTPLESKIDQGPFVNIEDDGPADAVAGIHKDDTTAATDDTSNVDRTGKEDSEEEESSKDVATSKKMDPGNNPDQTSIWLLAYIAITTTWPLLGSG LLFYLKQKWRRTSGDQLCLADIIKAVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035807 [exp]	0	1
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10035499 [exp]	5.1	0.8383
					Lus10018670 [exp]	31.5	0.8531
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025695 [exp]	31.6	0.8035
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	34.9	0.8300
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	38.5	0.8425
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10035967 [exp]	41.0	0.7972
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	43.5	0.8525
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	59.1	0.7881
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	63.9	0.8461
					Lus10004450 [exp]	69.5	0.8368

Compare expression of checked genes

Lus10035807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.