Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57910 112 / 4e-30 unknown protein AT4G30630 99 / 1e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036591 [exp] 440 / 2e-158 AT5G57910 117 / 4e-32 unknown protein Lus10022161 [exp] 201 / 8e-64 AT5G57910 110 / 3e-29 unknown protein Lus10036255 [exp] 198 / 7e-63 AT5G57910 105 / 2e-27 unknown protein Lus10026889 [exp] 42 / 0.0001 AT4G30630 47 / 8e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183000 [exp] 226 / 7e-74 AT4G30630 105 / 2e-27 unknown protein Potri.018G105300 [exp] 180 / 1e-56 AT5G57910 102 / 8e-27 unknown protein Potri.006G264900 [exp] 40 / 0.0004 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035808 pacid=23147628 polypeptide=Lus10035808 locus=Lus10035808.g ID=Lus10035808.BGIv1.0 annot-version=v1.0 ATGAAATGGGTTGCTGTTACTGCTTCTGCTGCTGGGTATGAGGATCCAAGGATCAGATTCAAGCATGAGAGTCTTATGCAGGATTATGATGAACTGTTTA AGGAAACAGAAGATAAGAGGAAGAGGTTAGAGCTGATGAAACAGAAGAAACTGACTCTAATGGCTGAAGTGAGTTTCTTAAGGCGTCGGTTCAAGCAGTT GACTGATATCCAGGTTCACCAAAACATGCAATCACAGACCACAGTAATGAAGAGTAAGAAAGTGAGGAACAAGGGAGTGAACTCCAGTGGCCCTGAGACT CCAGCATTGAGGCGGGCAGTTCCGAAGAAATTTGATTTGAATCGGAAGGGAAAGGTGTATAGTGGGAAGGAAACAATTTGCCAAATTGACCTTAATCAGA AGCAGAAGTCTCATTTTGGAAGAGAAGCTGCTTTGAGGAATTCCGGGATGATTCCTGACCTTAATGAGAAGGAAAAGATGTTTGGTGGAAAGGATAGGAA CAGTGCACCAATTTTCGACTTGAACGAAATATCGAGGGAAGAGGAAGAAGTGCAGACAAACGACGAAATGATGATGATGATGACGACTAGGATGGAGGAT CCGACGCGCACAAGTTCATTGCGAGGCGGGATTGATGAACAACACAACGATGTGAACTTATCGGCTTGTAGGAATGTCGGGAACGTGCCCAACCGAGCAG TAGGGAAGAGAAAGATATCGTGGCAGGATCCAGTAGCCTTAAGGGTGTGA
AA sequence Show only first row Show all	>Lus10035808 pacid=23147628 polypeptide=Lus10035808 locus=Lus10035808.g ID=Lus10035808.BGIv1.0 annot-version=v1.0 MKWVAVTASAAGYEDPRIRFKHESLMQDYDELFKETEDKRKRLELMKQKKLTLMAEVSFLRRRFKQLTDIQVHQNMQSQTTVMKSKKVRNKGVNSSGPET PALRRAVPKKFDLNRKGKVYSGKETICQIDLNQKQKSHFGREAALRNSGMIPDLNEKEKMFGGKDRNSAPIFDLNEISREEEEVQTNDEMMMMMTTRMED PTRTSSLRGGIDEQHNDVNLSACRNVGNVPNRAVGKRKISWQDPVALRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57910			unknown protein		Lus10035808 [exp]	0	1
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	1.7	0.8476
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	5.7	0.8298
AT5G57910			unknown protein		Lus10036591 [exp]	7.2	0.8272
AT1G71150			unknown protein		Lus10007946 [exp]	8.7	0.8215
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	11.2	0.8181
AT1G75860			unknown protein		Lus10034539 [exp]	13.3	0.8288
					Lus10016909 [exp]	14.7	0.8032
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	15.2	0.8136
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	16.9	0.7953
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004238 [exp]	19.3	0.7780

Compare expression of checked genes

Lus10035808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.