Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036593 [exp] 95 / 3e-26 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104600 [exp] 47 / 2e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035810 pacid=23147459 polypeptide=Lus10035810 locus=Lus10035810.g ID=Lus10035810.BGIv1.0 annot-version=v1.0 ATGATGAGAGACGCCATTCTCTGCTGGTTGCTACTAATTTTTGCCATTTCGCATGTTAATGATGCCCTTGTTCAATCATCCCATTCATTCTCTATCGACG CTCAACCTCACTATCCATTATCCCTCCAGTCAAGTAAGCCGGCGGATGAAACAGCTAAAGGAGGGGGAATGCATACAAGTGTCCGGAGATCAGGCGGCAA AGGCGGCAGCGGGAAGGGAGCAAACGCCGGATCAGACATGATCAGACAGCCTAAGAATCAACGAAGCTGCGGAGGATGCTCACTCATCTTCAACTCACTA ATGTCCTCTATAGGGAGAGGACAAGAAGCGGGTGCTTCCGACGTGGAAAGACGTGCAAGAGGAGTCTATGGCGGCGGAGATCTCCTCCGTCCACGAACCG GCAGCAAGAAGAACGCGGCACCGATCTCCTCCATGATAACTTCTTCCCCTCCTTATCTCTTCCCTGCAGGCTCTATGGTTTCTGTAGGGTTTTCCATCAT CATCCTCATGTACTTGTAG
AA sequence Show only first row Show all	>Lus10035810 pacid=23147459 polypeptide=Lus10035810 locus=Lus10035810.g ID=Lus10035810.BGIv1.0 annot-version=v1.0 MMRDAILCWLLLIFAISHVNDALVQSSHSFSIDAQPHYPLSLQSSKPADETAKGGGMHTSVRRSGGKGGSGKGANAGSDMIRQPKNQRSCGGCSLIFNSL MSSIGRGQEAGASDVERRARGVYGGGDLLRPRTGSKKNAAPISSMITSSPPYLFPAGSMVSVGFSIIILMYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035810 [exp]	0	1
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	4.1	0.9179
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	5.5	0.9022
AT2G20362			unknown protein		Lus10024963 [exp]	8.5	0.9124
AT5G21910			unknown protein		Lus10038069 [exp]	14.4	0.9003
AT1G31500			DNAse I-like superfamily prote...		Lus10026203 [exp]	14.8	0.8360
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	15.0	0.8756
AT5G14090			unknown protein		Lus10037042 [exp]	15.5	0.8838
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	16.7	0.8970
					Lus10003893 [exp]	21.0	0.8904
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	21.6	0.8924

Compare expression of checked genes

Lus10035810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.