Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16760 311 / 1e-105 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 223 / 1e-70 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 209 / 9e-65 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT2G43980 70 / 4e-13 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038765 [exp] 387 / 2e-135 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10039098 [exp] 387 / 8e-133 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10035662 [exp] 224 / 3e-71 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 212 / 2e-66 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 211 / 6e-66 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 167 / 4e-50 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 140 / 2e-39 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 79 / 3e-16 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10006145 [exp] 74 / 7e-15 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G047200 [exp] 335 / 4e-115 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 309 / 2e-104 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 304 / 2e-102 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 226 / 3e-72 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 209 / 3e-65 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.017G007500 [exp] 76 / 3e-15 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.007G144701 [exp] 46 / 7e-06 AT2G43980 145 / 1e-41 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10035811 pacid=23147525 polypeptide=Lus10035811 locus=Lus10035811.g ID=Lus10035811.BGIv1.0 annot-version=v1.0 ATGGCTCCTGACAAAGTCAGCACTTTCATCCAGCCATCTTTCCTCCAATACGCCGCCGTCCGAGGCCTCAATCTCGTCGCCGTCGACACATCCAAGTCTT TAGCTGAACAGGGTCCCTTCGATTGCATCGTCCACAAGTTGTACGACCACGATTGGAAGCTCCAGCTCGAATCCTTCTCCGCCCGATATCCCGATTCCAC AATCGTCGACCCGCTCCACGCCGTCGATAAGCTCCACAACAGAGTTTCCATGCTCCTGGTGGCGAGCAAGGTGAAACTCCTCCTTGAGCCTCATCGTCAC CGATTGGAGATTCCTCGACAAGTGGTGATTTCGAGTCTCAACGAGTTAAAACTGCGTAACGATGAAGTGGTTAAGGAGTTGGGGTTTCCACTGATCGCCA AGCCATTGCTAGCTAACGGCACATTTCTATCTCACAAGATGTATCAGATTTTTGACCAACAAGGGTTGGATGATTTGAAGGATTCAGAGACTCCGTTAGT GATCCAGGAGTTTGTGAATCATGGCGGGGTCATATTCAAAGTGTACGTAGCCGGAGAACACGTTCGATGTGTGAAGAGGAAGTCATTGCCAGACATTTCT GTTGACAAACTGGATCTTCTCAAGGGCAGTATACCTTTCGCCCAAATTTCGTCGGCCGATGAAAAGGATACGGCATTTGAAATGCCTCCGGAAGGGTTTA TGGAGGAGATTGCTCATGGGTTGAAGGAGGAGATGGGGATTAACTTGTTCAACTTTGATGTGATTAGGGATGCTAGAGATGAGAATAGGTACCTTGTGAT TGACATCAACTATTTCCCTGGGTACGCTAAGATGCCAAATTACGAATCGATGTTAACGAGTTTCTTCTTGGATCTCATGAAGAAAAAACAAGAAGGGGAA GGATTGGTTAAGGAGGAAAATGACCATAAGGATTCTGAAGTTTGA
AA sequence Show only first row Show all	>Lus10035811 pacid=23147525 polypeptide=Lus10035811 locus=Lus10035811.g ID=Lus10035811.BGIv1.0 annot-version=v1.0 MAPDKVSTFIQPSFLQYAAVRGLNLVAVDTSKSLAEQGPFDCIVHKLYDHDWKLQLESFSARYPDSTIVDPLHAVDKLHNRVSMLLVASKVKLLLEPHRH RLEIPRQVVISSLNELKLRNDEVVKELGFPLIAKPLLANGTFLSHKMYQIFDQQGLDDLKDSETPLVIQEFVNHGGVIFKVYVAGEHVRCVKRKSLPDIS VDKLDLLKGSIPFAQISSADEKDTAFEMPPEGFMEEIAHGLKEEMGINLFNFDVIRDARDENRYLVIDINYFPGYAKMPNYESMLTSFFLDLMKKKQEGE GLVKEENDHKDSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	1.7	0.8951
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	2.4	0.8388
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	3.0	0.8669
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	4.0	0.8261
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	8.7	0.8157
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10026276 [exp]	10.2	0.8685
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10037228 [exp]	11.3	0.7970
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	11.8	0.8029
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	13.6	0.7871
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	22.0	0.8469

Compare expression of checked genes

Lus10035811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.