Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 597 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 528 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G62410 197 / 6e-60 MIF4G domain-containing protein (.1) AT3G60240 191 / 6e-52 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 85 / 2e-17 HEAT/U-box domain-containing protein (.1) AT1G56030 48 / 8e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036594 [exp] 920 / 0 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 721 / 0 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 703 / 0 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10028156 [exp] 217 / 7e-61 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 216 / 2e-60 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 163 / 2e-45 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 715 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 701 / 0 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 622 / 0 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 608 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 207 / 1e-57 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 201 / 2e-55 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Lus10035813 pacid=23147353 polypeptide=Lus10035813 locus=Lus10035813.g ID=Lus10035813.BGIv1.0 annot-version=v1.0 ATGCAGCAAGGTGATCAGACGGTGTTGAGCTTGAGGCCTGGCGGTGGTCGAGGAGGAGGTAGCAGCAGACTCTTCAACCCACGTTCAGACTCTTCTCTTA TTGCTTCCAACAATAATCCCTCTGCTGCTACTGTTTCCTTTGGCGATCTCTCATTCCTCCGCCCTCATGGCGGCGCTTCTTCCCTAAAGTTTGGCAACTC GTATTTCGAGGGACGTGAGCGGGTGAAGTACACCCGGGAAGAACTATTGCAGATCAAAGAGGCTGTTGGTGTAATCTCGGACCAGATTCTGAAAATCAAA CGGGAATTTGAAACTGAGCTTTTTGGTGAAGATCAGAACTGGACGCGAGCAGAGAACAATCCACCAAATCAGCAGCCTCAGACTCGGTATTCTGAGCCAG ACAGTCGTGACTGGAGAACTCGTTCTACGCCAATTCCTAGCCCTGCTCCTCCTCCGGCTGGAGGGGATGAGAGGTCTTGGGACTCAATTAGAGAAAGGGA TGGAAACCAATTCAATCGGCAAGATCAGCTCAATTCCCAATTTTCACGGGCACAAATATCTTCAAACCAATCGGGTGGTCCTCCTCCTGCGTTAGTCAAA GCTGAGGTGCCATGGTCAGTTAAGCGGGGCACTCTTTCTGATAAGGACCGCGTCTTAAAGACCGTTAAAGGTATTCTCAATAAGCTTACTCCAGAAAAGT TCGATCTTCTAAAAGGCCAGCTTATTGACTCGGGCATAACATCAGCTGATATTTTGAAGGGTGTGATCTCTCTCATATTTGAGAAAGCAGTGTTGGAACC CACGTTCTGTCCCATGTATTCACAGCTATGTTCTGATCTTAATGAAAAGCTTCCTCCTTTCCCATCAGATGAGACTGGTGGAAAGGAAATTACATTTAAA AGAGTCCTCTTGAATAACTGCCAAGAGGCATTTGAAGGTGCTGATAAGTTGAGGGAAGAAGTGAGGCAAATGACAGCTCCAGATCAAGAGCTGGAGCGCA AGGATAAGGAAAGAATGGCGAAGCTTCGTACCTTGGGAAATATACGCTTGATTGGTGAGCTATTGAAGCAGAAGATGGTCCCTGAAAAAATTGTTCATCA CATTGTTCAGGAGCTGTTGGGCCCTGATAATAAGGTTTGTCCGGCAGAAGAAAATGTCGAAGCAATTTGTCAGTTTTTCATTACAATTGGCAAGCAACTT GATGAGAGCCCCAAGTCTCGATATATCAATGACGTATATTTTGGTCGTTTGAAAGAAGTGGCTTCAAATCCTCAGCTTGCTGCACGTTTGAGGTTTATGG TCAAAGATGTTCTTGACCTGCGATCGAATAAATGGGTTCCTAGGCGTGAGGAGGTCAAAGCCAAAACCATCACTGAAATTCATGCGGAAGCAGAAAAGAA TCTTGGGTTACGACCAGGTGCAACTGCAAGTATACGAAATAACCGAGGTGCGGTTTCTGCTACTGTTGGAGCTGGTGGCTTCCCAATTAACCGACCTGGT ACTGGAGGCATGATGCCCGGAATGCCAGGAGCTAGGAGCAAGGAAGTGGCGGTTTAG
AA sequence Show only first row Show all	>Lus10035813 pacid=23147353 polypeptide=Lus10035813 locus=Lus10035813.g ID=Lus10035813.BGIv1.0 annot-version=v1.0 MQQGDQTVLSLRPGGGRGGGSSRLFNPRSDSSLIASNNNPSAATVSFGDLSFLRPHGGASSLKFGNSYFEGRERVKYTREELLQIKEAVGVISDQILKIK REFETELFGEDQNWTRAENNPPNQQPQTRYSEPDSRDWRTRSTPIPSPAPPPAGGDERSWDSIRERDGNQFNRQDQLNSQFSRAQISSNQSGGPPPALVK AEVPWSVKRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFEKAVLEPTFCPMYSQLCSDLNEKLPPFPSDETGGKEITFK RVLLNNCQEAFEGADKLREEVRQMTAPDQELERKDKERMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKVCPAEENVEAICQFFITIGKQL DESPKSRYINDVYFGRLKEVASNPQLAARLRFMVKDVLDLRSNKWVPRREEVKAKTITEIHAEAEKNLGLRPGATASIRNNRGAVSATVGAGGFPINRPG TGGMMPGMPGARSKEVAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	4.8	0.9016
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	4.9	0.8957
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	8.8	0.8416
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	8.9	0.8745
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	9.8	0.8684
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	10.4	0.8755
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	12.6	0.8839
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	14.6	0.8933
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	15.2	0.8710
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	15.4	0.8354

Compare expression of checked genes

Lus10035813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.