Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24060 216 / 1e-68 Translation initiation factor 3 protein (.1) AT4G30690 207 / 7e-66 Translation initiation factor 3 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036595 [exp] 457 / 5e-164 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104000 [exp] 261 / 5e-87 AT2G24060 278 / 2e-93 Translation initiation factor 3 protein (.1) Potri.006G182000 [exp] 209 / 1e-66 AT2G24060 251 / 3e-83 Translation initiation factor 3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00707 [flax] [poplar] IF3_C Translation initiation factor IF-3, C-terminal domain PF05198 [flax] [poplar] IF3_N Translation initiation factor IF-3, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035814 pacid=23147641 polypeptide=Lus10035814 locus=Lus10035814.g ID=Lus10035814.BGIv1.0 annot-version=v1.0 ATGGCCGGAGTTACAACCGCCGGCTCCTTCACGTTCACCCCAGTGCTAACAGCCGGAAAACAAAAGCCTCATTTTTCGTCGTCCCTAGACTCCAAGCTCA TAGCCCACAGGTTCCACTGCTCATGTATTTGTAGATTAGGGTCACTAGTTCCTTCTCCCAGGACTAGCTCCGTCGTGGTATCGGCTCGTTACGGCGGCGG AGGAGGCGGGCGTTCGCAGAAGTACGATGATGAAGACGACGAAGACGATCCGGCCCTTAACGTATCTGCAGTTCGGTCGGCTACTGTGAGGCTTATTGAC GAGAATCAGAACATGGTTGGAGTGGTACCTAAAATTGAAGCCATTCGGATTGCTGAAGAAGCTGACCTTGATTTGGTGGTCTTGTCTCCAGATTCAGATC CTCCAGTTCTGAAAATAATGGATTACACAAAGTATAGATATGAACAACAAAAGAAAAAGAAAGACCAGCAGAAGAGAAGTGCTGCGAGTCGAATGGATCT AAAGGAGCTTAAAATGGGTTATAGCATCGATCAGCATGATTATGACGTACGGTTGAGAGCAGCTAAAAAGTTTTTGAAAGATGGTGATAAGGTTAAGATT GTGGTAAACTTGAAAGGTCGGGAAAACGATTTCAGAAACAAGGCCATTGATCTTATCAGACGTTTCCAGTCTGATGTTGGGGAGCTGGCAACGGAGGAAA GCAAGAATTTCAGGGTTAAGAACATATTTATTACAATGCTTCCAAATAAGGCAGTTGTGGAAAAAGCTCCAGAACCTCCAAAGCAAAAAGACAAGCCAGC TGCTGCAGAGGAAGTTTCGACCAACGCGTCGGTTAACAGTACGGACACACTTCAGCCAGAGCTCGTTGATGGGTGA
AA sequence Show only first row Show all	>Lus10035814 pacid=23147641 polypeptide=Lus10035814 locus=Lus10035814.g ID=Lus10035814.BGIv1.0 annot-version=v1.0 MAGVTTAGSFTFTPVLTAGKQKPHFSSSLDSKLIAHRFHCSCICRLGSLVPSPRTSSVVVSARYGGGGGGRSQKYDDEDDEDDPALNVSAVRSATVRLID ENQNMVGVVPKIEAIRIAEEADLDLVVLSPDSDPPVLKIMDYTKYRYEQQKKKKDQQKRSAASRMDLKELKMGYSIDQHDYDVRLRAAKKFLKDGDKVKI VVNLKGRENDFRNKAIDLIRRFQSDVGELATEESKNFRVKNIFITMLPNKAVVEKAPEPPKQKDKPAAAEEVSTNASVNSTDTLQPELVDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	0	1
AT2G24060			Translation initiation factor ...		Lus10036595 [exp]	1.0	0.9367
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	5.7	0.9130
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	6.6	0.9131
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	7.3	0.9059
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	9.2	0.9127
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	9.2	0.8905
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	10.6	0.9128
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10010953 [exp]	14.5	0.8744
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	15.2	0.9028
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	15.5	0.8520

Compare expression of checked genes

Lus10035814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.