Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30700 1003 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 555 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 530 / 2e-177 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 516 / 3e-171 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G11460 492 / 3e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 491 / 4e-164 MEF22 mitochondrial editing factor 22 (.1) AT3G22690 495 / 1e-163 unknown protein AT3G57430 494 / 1e-162 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 491 / 1e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 485 / 3e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 587 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036596 [exp] 582 / 0 AT4G30700 445 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 522 / 2e-174 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 523 / 5e-174 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10001220 [exp] 524 / 6e-174 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 520 / 2e-172 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 504 / 3e-167 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10015225 [exp] 501 / 2e-165 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 487 / 5e-161 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181800 [exp] 1138 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 570 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 545 / 0 AT3G22690 582 / 0.0 unknown protein Potri.004G059400 [exp] 527 / 2e-175 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 518 / 1e-172 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 513 / 9e-172 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G006800 [exp] 503 / 4e-167 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G322100 [exp] 496 / 3e-166 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 502 / 6e-166 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 503 / 7e-166 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035815 pacid=23147358 polypeptide=Lus10035815 locus=Lus10035815.g ID=Lus10035815.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCCGGAGCCGTAACGACAACGGCAGCGACCACATACCTTCTTCGTACCCGCGACCTATTCCTAAATCTCCTCTCCAGAGCCGCCAGTCTCT CTCACCTCACTCAAATCCACGCGCAGCTCCTATACCACGGCTCCCGAAACGACATTGCTTCCGCCACAAAGCTCACTCAACGCCTCTTCGATTTCAACGC CGTTCACCACGCTCGTTCCCTCTTCTTCACCGTTTCGGGACCCGATCGTTTTTTGTATAACGTACTTGTCAAAGGCTTAGCTAGCAAAGATTCTCCTAGA TCGGCGATTTCGTTATTTAACCATTTGAGGGCAAGTTGCGATCTTGTACCGGATAATTTTACATACGCTTTCGTTATTCCGGCGGCGGCGAGTCTCGGGG ATGTCAAGGTTGGGGATTCGTTACATGGGCAGGCTATTGTGGCTGGCTATGGTTGCGATTTGTTTATTGGATCTGCACTTGTTGATTTCTACTTTAAGGT GGGAAGAGATGATTTTGCACGGAAGGTGTTCGATGAATTGCCCAGAAGAGATACTGTTTTGTGTAATACGATGATATCAGGGTTGTGGAGGGGGTCTCGG TTTGAGGACTCCGTTAGGGTTTTTGAGGGGATGCTTTCTGGTGGTGATGATAGGACTAGGCTTGATTGTACATCGGTGATATCAATTCTACCGGCAATTG CTGAATTGCAGGATTTGAGACTTGGGATGGAGGTACATTGTCTGGCGATAAAGTTTGGATTCTCTTCTCATCTTTCTGTTCTCACTGGGTTGATTTCGCT GTACACGAAATGCGGGGATGTTGAGGCGGGACAGGTGTTGTTCGGGCAGATTGGTAGGAAGGATTTAATTTCTTGTAATGCTATGATTGCAGGTTTTACT TGCAATGGCGAAACTGAGTCTGCTGTGAGGTTGTTTAGAGAGTTGCTTCTATCAGGGGAGAAAGTTAATCCAAGCACAATTGTGGGAATGATTCCAGTCC ATTTTCCATTTGGAAATTTGCTACTTACTGATTGTATTCATGGTTTCAGCATAAAATCAGGTATGGTGTCTCGCCCAGCTTTATCAACAGCACTGACCAC GATATACAGTAGATTAAATGAGATGAAATCTGCACGGCAAACTTTTGAGGAATCGTCAGAGAAAACCTTAGCTTCTTGGAACGCAATGATATCAGGTTAC ACACAGAATGGTTTAACAGAAGCAGCGGTTTCTCTCTTCCAGGAGATGCAGATGTCTCATATTAGTGCTAACCCTGTCACCGTTACAAGTATTCTGTCAG CCTGCGCCCAACTTGGAGCATTGAGTCTGGGCAAGTGGGTTCATAGTTTGATTAAGAACAACAACTTTGGGTCCAACATATATGTTTCAACTGCTCTAAT TGACATGTATGCCAAGTGTGGCAGCATTGTGGAGGCTCGGTTGTTATTTGATTTGATTCCCAATAAGAACGAGGTAACTTGGAATGCAATGATTTCTGGA TATGGTCTTCATGGGCATGGGCAGGAAGCACTGAAGCTTTTCTATAAGATGTTGAACTCTGGTATTTCCTTGTCTAAGGTAACTTTTCTTTCCATCTTAT ACGCCTGCAGTCATTCTGGTTTGGTTAAAGAAGGAGATGAAATTTTTAGATCAATGATCCGTGACCATGGTTTTCAACCAATGGCTGAGCACTATGCTTG TATGGTTGATATCCTTGGGCGCGCTGGAAAGTTGGAGGAAGCTTTGGAGTTCATAAAAGGAATTCCGGAGAATCCCACCCCTCCAATATGGTCAACGTTG CTTGGTGCTTGCATGATTCATAAAGATACAAACATGGCTCGTCTGGCTTCCGAAAAGCTTTTTGAATTGGACCCGGAAAATATGGGGTACTATGTTCTAA TGTCAAATATCTACTCATCTGAGAGGAACTATCCAGGAGCTGCATTTGTGAGGCAAGTAGCTAAGAAGAGAAAACTGGCAAAGACTCCAGGATGTACTCT GGTTGAGATTCATCAGATACCTCATGTCTTTAAAGCAGGTGACTGGTCTCATCCACAATCAACAGCTATACATGCAGAGCTAGAGAAATTGAATACCAAG ATGAAGGAAGCAGGGTATCAAGCAGACACAATAACGGCTTTGCATGATGTTGAGGAGGAAGAGAAGGAACTGATGGTGAAGGTTCACAGTGAGAAGCTAG CCATTGCTTTTGGTCTAATATCTACCGAGCCTGGAACTGAGATAAGGATCTTCAAGAATCTCCGCATTTGTCAGGACTGCCATACAGCATCTAAGTACAT ATCTAAGATTACACACAGAGTTATTGTAGCTAGGGATGCCAATCGATTCCATCATTTCAAGGATGGATACTGTTCTTGTGGAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10035815 pacid=23147358 polypeptide=Lus10035815 locus=Lus10035815.g ID=Lus10035815.BGIv1.0 annot-version=v1.0 MAAAGAVTTTAATTYLLRTRDLFLNLLSRAASLSHLTQIHAQLLYHGSRNDIASATKLTQRLFDFNAVHHARSLFFTVSGPDRFLYNVLVKGLASKDSPR SAISLFNHLRASCDLVPDNFTYAFVIPAAASLGDVKVGDSLHGQAIVAGYGCDLFIGSALVDFYFKVGRDDFARKVFDELPRRDTVLCNTMISGLWRGSR FEDSVRVFEGMLSGGDDRTRLDCTSVISILPAIAELQDLRLGMEVHCLAIKFGFSSHLSVLTGLISLYTKCGDVEAGQVLFGQIGRKDLISCNAMIAGFT CNGETESAVRLFRELLLSGEKVNPSTIVGMIPVHFPFGNLLLTDCIHGFSIKSGMVSRPALSTALTTIYSRLNEMKSARQTFEESSEKTLASWNAMISGY TQNGLTEAAVSLFQEMQMSHISANPVTVTSILSACAQLGALSLGKWVHSLIKNNNFGSNIYVSTALIDMYAKCGSIVEARLLFDLIPNKNEVTWNAMISG YGLHGHGQEALKLFYKMLNSGISLSKVTFLSILYACSHSGLVKEGDEIFRSMIRDHGFQPMAEHYACMVDILGRAGKLEEALEFIKGIPENPTPPIWSTL LGACMIHKDTNMARLASEKLFELDPENMGYYVLMSNIYSSERNYPGAAFVRQVAKKRKLAKTPGCTLVEIHQIPHVFKAGDWSHPQSTAIHAELEKLNTK MKEAGYQADTITALHDVEEEEKELMVKVHSEKLAIAFGLISTEPGTEIRIFKNLRICQDCHTASKYISKITHRVIVARDANRFHHFKDGYCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	0	1
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	2.8	0.8737
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10022925 [exp]	3.5	0.8555
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	4.6	0.8495
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	6.5	0.8621
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	9.2	0.8824
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	15.6	0.8731
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	19.4	0.8698
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	22.1	0.8599
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	23.4	0.8728
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10020590 [exp]	24.4	0.8419

Compare expression of checked genes

Lus10035815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.