Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57830 149 / 4e-41 Protein of unknown function, DUF593 (.1) AT4G30830 126 / 7e-33 Protein of unknown function, DUF593 (.1) AT2G24140 91 / 1e-20 Protein of unknown function, DUF593 (.1) AT3G54740 87 / 8e-19 Protein of unknown function, DUF593 (.1.2) AT5G06560 88 / 9e-19 Protein of unknown function, DUF593 (.1) AT3G11850 57 / 9e-09 Protein of unknown function, DUF593 (.1.2) AT1G70750 56 / 3e-08 Protein of unknown function, DUF593 (.1) AT5G16720 56 / 4e-08 Protein of unknown function, DUF593 (.1) AT4G13630 55 / 5e-08 Protein of unknown function, DUF593 (.1.2) AT1G18990 55 / 5e-08 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036599 [exp] 619 / 0 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 283 / 2e-92 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 278 / 2e-90 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 91 / 1e-19 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 89 / 4e-19 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 87 / 2e-18 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 84 / 2e-17 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 62 / 4e-10 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 57 / 1e-08 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103500 [exp] 251 / 2e-79 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 244 / 1e-76 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 87 / 2e-18 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 85 / 9e-18 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 61 / 5e-10 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 61 / 1e-09 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 59 / 4e-09 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 59 / 5e-09 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 55 / 6e-08 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.017G055100 [exp] 54 / 8e-08 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10035817 pacid=23147588 polypeptide=Lus10035817 locus=Lus10035817.g ID=Lus10035817.BGIv1.0 annot-version=v1.0 ATGGCTGAAACTCAGCTGTCAGAAAGTGATGCCGTTAGTCTAAGAGAAGCTCTCCAGGGACAGCAGCAGCTCCTTCAGAAGCTCTACCGCGAACTAGACG ACGAAAGGGAAGCTGCTGCAACTGCAACGAGTGAAGCTATGTCGATGATCCTACGTCTGCAAGGAGAGAAAGCTGAATTGAAGATGGAAGCGAATCAGTA CAAGAGGATGGCTGAGGAGAAGATGTGTCATGCCGAAGAAGCATTGGCTCTCTGCGAGGATATCTTGTATCAGAAAGAGATGGAGATCGCTTCTCTTGAG TTCCAGATTCAGTCTTACAGGAAGAGACTCATTAGCTTGGGATTTGCTGATGCAACTGTATCAGAACAAGGTATCGTCCATGGCAATGTGAGGAGGCTTA ACTCGTTGCCACAGGCTCATCTCGAGGCTAAGAAAGCCGGGTTTGATAAGAAACAAGTTGCTATTCATGAGGAAGCTGAGTTCCAAGTAGAGATTACTCA CGAGTCAGGCAGGAAATCAGGTGGAGACATCAATTCTTACTGGGAAAAGATCAGGAGACTGGACGGACGACTTAAGGAGATTTCGGATGGAAGAAGCAAA GATCATGGCAAGAACAATTCCACAATCTGGAGAGGTGGCACTTGGTCTCATTCCTTGTATTCACAACTTAGGGACAACTCAAATTCACAAGACCTGGGCA ATAATGTAGATAGTCAAGTGTCATGCGAGTTGCCCTGGAATCAAAAACCTCCTATGCAATGTGAGGAGGGTAATGAGGATCAAGTGAAGGAAGTTCTTCC GTATTGTTCAGACAAGGAGAAAAAGAAAGCTCCAAAAGATGCACCAGTTGTCATTGACAATGGTTTCCCCCCTGCTCCTCCTGCTGTTCATTCATCAGTC ACTCCAGGTGATTACCATAATATGTTGCGACGAATCGAGAGACTTGAACGTGCGAGGAGCAGTGTGGGGCAGCAGGAGAACATTGTTTCCCCAGGAGGAG AAGAAATGCATCTGTTGAAGGCAATTCAGGAACAACTGAGCGTGATACAGACTCAACTGACAAGTCAAAAAGCTCGAACGCCTGTCGCTCGAGATGAACC CTGTCTTGATGTTCTCCAGGAGGCAATGCTGTACTTCTGGCTTTGA
AA sequence Show only first row Show all	>Lus10035817 pacid=23147588 polypeptide=Lus10035817 locus=Lus10035817.g ID=Lus10035817.BGIv1.0 annot-version=v1.0 MAETQLSESDAVSLREALQGQQQLLQKLYRELDDEREAAATATSEAMSMILRLQGEKAELKMEANQYKRMAEEKMCHAEEALALCEDILYQKEMEIASLE FQIQSYRKRLISLGFADATVSEQGIVHGNVRRLNSLPQAHLEAKKAGFDKKQVAIHEEAEFQVEITHESGRKSGGDINSYWEKIRRLDGRLKEISDGRSK DHGKNNSTIWRGGTWSHSLYSQLRDNSNSQDLGNNVDSQVSCELPWNQKPPMQCEEGNEDQVKEVLPYCSDKEKKKAPKDAPVVIDNGFPPAPPAVHSSV TPGDYHNMLRRIERLERARSSVGQQENIVSPGGEEMHLLKAIQEQLSVIQTQLTSQKARTPVARDEPCLDVLQEAMLYFWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	0	1
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	9.5	0.6995
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	13.4	0.6570
AT3G26740		CCL	CCR-like (.1)		Lus10041522 [exp]	14.6	0.7008
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	15.4	0.6689
AT3G57360			unknown protein		Lus10032322 [exp]	18.5	0.6521
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10036175 [exp]	19.2	0.6809
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	26.7	0.6508
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	49.4	0.6399
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10021879 [exp]	58.9	0.5961
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	59.6	0.6140

Compare expression of checked genes

Lus10035817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.