Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30825 998 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 160 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 153 / 6e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 152 / 2e-37 PGR3 proton gradient regulation 3 (.1) AT5G01110 147 / 3e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 145 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G14770 144 / 5e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 140 / 8e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 137 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 136 / 5e-33 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036601 [exp] 1008 / 0 AT4G30825 499 / 4e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036600 [exp] 531 / 0 AT4G30825 428 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 153 / 5e-38 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 149 / 2e-36 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 146 / 8e-36 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 145 / 2e-35 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 144 / 3e-35 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 140 / 5e-34 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 139 / 2e-33 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005100 [exp] 1171 / 0 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 155 / 7e-39 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G049900 [exp] 150 / 6e-37 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G297300 [exp] 145 / 2e-35 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 144 / 6e-35 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.003G105700 [exp] 141 / 3e-34 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G166200 [exp] 140 / 5e-34 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 139 / 3e-33 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 137 / 1e-32 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G049400 [exp] 135 / 4e-32 AT5G27270 1179 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035818 pacid=23147430 polypeptide=Lus10035818 locus=Lus10035818.g ID=Lus10035818.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTGAAACTCTCCATCTCTTTCGAAGCTGAAAGATCAAACTTTTATGCAAACCCACTTCAGGTTCCTGCGTATTGCTCTGTCTTCTCCATTA TTACCTTCAGTAGAGCTCCTTCTATAACTTGCTCAGGTAGATTCTATCTTTCCAGAGTCTCCCCAATCGGAACTGAATTGCAGGATGTGGTGAGTGAGAG TGTTAGAGGGGATTTGAGCATTCAAAAGAGGAAAGGAATAAAAGGAAGTGGGATATGGACGAAAACGAATAAGGGTGTTAAACCTGATTCTAAGAGCAAG CTAGAAAAGGATGATCTTTTTGTTTATGAAGGTGGGCTGGATGCGAATTATGGCGTCATTCAATCTGCTGACTTAAGCTTACAACGCTGCAATTTTGTGC TGAAGAGGTTGGAGAAGGAAAGTACCGATAGCAAAACGTTGTGTTTCTTTGAGTGGATGAGGAAGCATGGCAAGTTGGTAAGTAATGTGGCTGCTTACAA TGTGATACTTCGAGTTTTTGGTAGGAGACGGGATTGGGAATCTGCAGCTAGTGCAATCGAGGAAGTGACTAAAAACTGTGGGGATCAGGTTGATTTTAGG GTTTTCAACACACTAATTTTTGCATGTTGTAAGCAAGGCAATGTGAGGTTGAGTAGTAAATGGTTCAGGATGATGCTGGAGCTTGGAATTCAGCCAAATA TCGCCACATTTGGAAAGCTCATGGGGCTTTACCAAAAGGGTAGGAATGTTAGGGAGGCAGAGTTTGCATTTGGCCAAATGCGGAGTGTTGGCATCACGTG TGAGTCTGCTTACTCTTCCATGATTACCATCTATACTCGTTTAAGTTTGCATGCTAAGGCTGAGGAGGTTATTCGCTTGATGAAACAAGACAGTGTGGTG TTGAATATGGAGAATTGGTTGGTTGTGATTAATGCATATAGTCAGAGTGGGAAGTTAGTTGAGGCTGAGAAGCTGTTTGTTTCCATGCAAGAGGCTGGCT TTGACCCAAATATTGTAGCATATAACACATTGATAGCCGGGTATGGGAAAGTATCTAACATGATTGCTGCTCAACGCCTGTTCATAGCCATCAACGATGC AGGTTTGCACCCTGATGAAACTACTTATCGTTCCATGATTGAAGGTTGGGGCCGAATTGACCACTATAAGGAGGCAGGATGGTACTATAAGGAGCTGAAA CGATTGGGGTTTAAGCCAAACTCCTCCAATTTATACACTTTGATCAGTTTGCAAGCTGCACATGGTGATGAAGTGGGTGCTATTCAAACTTTGAACGATA TGCTGGAATTGAAATGCCAACATTCCTCGATTGTCGGCACAGTAGTGAAAGCGTATGAAAGAGTAGGAAGGATTGACAAAGTCCCTCTTCTTTTGGTAAA CAAACCTTCTTGCTCTGAACAGTCCTTGATCGATCAGCCTTCGTTCTATCAACACATTCTTGTAAACCAAACTTCTTGCTCCATTGTCGTTATGGCTTAT GTGAAGAACAACTTGGTGGATAATGCCATCAAAGTGTTGCGAGAAAAAAAGTGGAAGGATCCCCGATTTGAGGAGAACCTGTATCATTTACTAATTTGCT CTTGCAAGGAATTGCGGAAGCTTGACAATGCTGTCAAGATATATATGCAGATGCCTAAATCCGATGATGAGCCGAACTTGCACATTTCCTGCACAATGAT TGGTATTTATACCATGATGGGTCGATTTGGAGAAGCGGAGGAACTTTATCTGAAGGTGAAATCTTGTGGAATTTCCTTGGATTTGATTGGCTTTAGCATT GTTGTTCGGATGTATATTAAAGCTGGTTCTTTGAAAGACGCTTGTACTGTCTTGGAAACAATGGAGAAACAGAAAAACATAGTTCCTGATGTTTATCTGT ATCGAGACATGCTACGAGTTTACCAACAGTGTGGCCTGGTGAACAAGTTGAAGGATCTCTACTATAACTTGTTAAAAAGTGTGATTGTATGGGATCAGGA ATTGTACAGGTGCGTCATAAACTGTTGTGCCAATGCTCTCCCAGTTGATGAGCTTTCCAGACTTTATAGTGAAATGATTAGGAAGGGATTCGTTCCCAAT ACTGTTACTTTGAATGTCATGCTTAATGTTTACGGAAGATCAGAGCATTTTGAGGAGGCTGAGGAGATGCTGGAAATGGCCAAAAAACGAGGTCTAGTTG ATGCCATCTCTTACAACACTATGGTTGCTGCCTATCGTCGCAGTAAAGACTTCAAGATGATGTCCTCAACCATACGGACAATGCAGCTTGATGGATTTTC TGTTTCGCTCGAAGCATTTAACTGCATGTTGGATGGATATGGTAAAGAAGGTCAAATGGGGAGTTTCCAGAATGTATTGAAGAGGATGAAGGAATCAAAT TCGTCCCTAGACAATTATACTTACAACATCATGATGAACATCTACGGAGAACAAGGATGGATTGAAGAAGTTGAACAAGTGCTCAAGGAACTGAAAGAAT ACGGATTGAGACCAGATATAGTCAGCTACAACACATTGATAAAAGCATATGGGATTGCTGGGATGGTTAAAGAGGCAGTGAGCTTGATGAAGGAAATGAG AGAGAATGGGGTAGAACCCAATAAGATCACCTACACTAATTTGATTATTGCATTGCAGAAGAATGACGAGTACTTGGAATCTGTCAAATGGTCATTGTGG ATGAAGCAGATTGGTATATGA
AA sequence Show only first row Show all	>Lus10035818 pacid=23147430 polypeptide=Lus10035818 locus=Lus10035818.g ID=Lus10035818.BGIv1.0 annot-version=v1.0 MASLKLSISFEAERSNFYANPLQVPAYCSVFSIITFSRAPSITCSGRFYLSRVSPIGTELQDVVSESVRGDLSIQKRKGIKGSGIWTKTNKGVKPDSKSK LEKDDLFVYEGGLDANYGVIQSADLSLQRCNFVLKRLEKESTDSKTLCFFEWMRKHGKLVSNVAAYNVILRVFGRRRDWESAASAIEEVTKNCGDQVDFR VFNTLIFACCKQGNVRLSSKWFRMMLELGIQPNIATFGKLMGLYQKGRNVREAEFAFGQMRSVGITCESAYSSMITIYTRLSLHAKAEEVIRLMKQDSVV LNMENWLVVINAYSQSGKLVEAEKLFVSMQEAGFDPNIVAYNTLIAGYGKVSNMIAAQRLFIAINDAGLHPDETTYRSMIEGWGRIDHYKEAGWYYKELK RLGFKPNSSNLYTLISLQAAHGDEVGAIQTLNDMLELKCQHSSIVGTVVKAYERVGRIDKVPLLLVNKPSCSEQSLIDQPSFYQHILVNQTSCSIVVMAY VKNNLVDNAIKVLREKKWKDPRFEENLYHLLICSCKELRKLDNAVKIYMQMPKSDDEPNLHISCTMIGIYTMMGRFGEAEELYLKVKSCGISLDLIGFSI VVRMYIKAGSLKDACTVLETMEKQKNIVPDVYLYRDMLRVYQQCGLVNKLKDLYYNLLKSVIVWDQELYRCVINCCANALPVDELSRLYSEMIRKGFVPN TVTLNVMLNVYGRSEHFEEAEEMLEMAKKRGLVDAISYNTMVAAYRRSKDFKMMSSTIRTMQLDGFSVSLEAFNCMLDGYGKEGQMGSFQNVLKRMKESN SSLDNYTYNIMMNIYGEQGWIEEVEQVLKELKEYGLRPDIVSYNTLIKAYGIAGMVKEAVSLMKEMRENGVEPNKITYTNLIIALQKNDEYLESVKWSLW MKQIGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	0	1
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	1.7	0.8970
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	2.8	0.8782
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	5.5	0.8753
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	7.7	0.8778
AT2G23390			unknown protein		Lus10038137 [exp]	8.3	0.8787
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	8.5	0.8844
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	8.8	0.8747
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	9.3	0.8127
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	12.8	0.8595
AT1G66330			senescence-associated family p...		Lus10002290 [exp]	13.0	0.8308

Compare expression of checked genes

Lus10035818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.