Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30780 514 / 3e-177 unknown protein AT2G24100 486 / 4e-168 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT3G05770 133 / 8e-34 unknown protein AT1G54300 118 / 2e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036602 [exp] 1150 / 0 AT4G30780 511 / 5e-176 unknown protein Lus10024097 [exp] 375 / 3e-124 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10041622 [exp] 375 / 3e-124 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 179 / 2e-50 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 161 / 2e-41 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 149 / 1e-38 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 147 / 5e-38 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10007704 [exp] 102 / 1e-25 AT4G30780 74 / 1e-16 unknown protein Lus10024256 [exp] 60 / 4e-10 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102800 [exp] 747 / 0 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 736 / 0 AT4G30780 503 / 2e-173 unknown protein Potri.003G185050 [exp] 526 / 0 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 487 / 1e-167 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.013G009000 [exp] 210 / 2e-60 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 179 / 2e-49 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035819 pacid=23147409 polypeptide=Lus10035819 locus=Lus10035819.g ID=Lus10035819.BGIv1.0 annot-version=v1.0 ATGGTTCAGTTGATGAAATCGGACAAAATTCAGACCGGCGCAACTGAAGCTCCGTCGTCGATCGGGAGCAAGGTTTCGCCGGTGAAGCTTGAGATCGTTG AGGATCCGTTGGAGGAAGAGCACGGCCCTCTTAACAAGCGATCCAAGACATCTCGGTCTTTTCAACAGTGGGGTGCCGGTGCCAATGCATTTCCTGTTCC TCCGTCGCAGTTCAATCCACTAGATGAGCCAAGCCCTCTTGGATTGAGGCTGAGGAAGAGTCCATCACTGTTGGATTTGATCCAGATGAAGCTCTCTCAG GGGACTGCTTCTTCAACTCCAGGAGCTAAGGAGAGTGCGAAACCAAGCTCTGGAGTAAAGAAAGAGGGCAAAGGGGCTGGCGCATCCAGCTCAATTGATA AGCTCAAGGCTTCGAATTTTCCTGCTTCTGTGCTCAGGATTGGTTCTTGGGAGTATACGGCAAGATATGAAGGGGAGTTGGTGGCGAAGTGTTATTTTGC GAAACATAAGCTTGTGTGGGAAATTCTCGAAGGTGGCCTCAAGAGTAAGATTGAAATCCAGTGGTCGGATATTATCGGTCTAAAAGCGACCGTCCCGGAA GATGGACCTGGGACGTTGAATGTTGTGCTTGCCAGACAGCCACTTTTCTTTAGGGAAACTAATCCGCAACCTAGAAAGCACACATTGTGGCAGGCAACTA CAGATTTTACCAATGGGCAAGCTAGCATACACAAGCAACATTATCTGCAATGCCCTCAAGGGATGCTGAACAAACATTTTGAAAAGCTCATACAATGTGA TATGCGCTTGAACTTCTTAAGCCAGCAACCAGAGATTGCCTTGGATTCACCATTCTTCGAACAACGAGCATCTGTTTTCGATGAGCTTGATGAATCCAAA AATCAAGAGCTCAATCCAGTGGACAATGGCCAAGGGTCATCTGCAGCTGGCTTGCAAAATCTTGCATCACCATCTGCAGGTCATTCCTCTTCCTTGGATC TTGACAGAGGGGATCATACTGGCACAACATCAGAACATATGTCCCGTGAAGCTCTTTCTCCGAGCTCAGTCATGGACACACATGCAATTGAAGGAAGAGG AAATTTCGAGTCTGTGGATTCAAGAGCATCAAGGAACTGGGATCAGATAAAAGTTCCAGGTCTGACACCATCGATGTCAATGAGCGATTTTATGAGCCAC CTTGGAAACTGCATCTCCGAACAGATGAACTCCGGGAATGCACCCCTGACTGCTGATGCAGAAGAAAGTCGAGAGATATTGTCAGATATTGCCCAGTATC TTCTTAGTGACACCCAACTAACGACAGCCTCTGATGAGAAAAGACTAATGGCCAGGGTCGACTCTCTCTGTTGCCTTTTGCAAAAAGACCCATCTTCATC ACAGAATCTGCAGACCATTGGAGAGGGCAGTAACAAAGAATCTGAGGATGGGGACGGTACCTTTGATGAGAAAAGGCTAATGGCTAGGGTCAACTCTCTG TGCTGCCTTCTACAGAAGGATCCTGCTCCATCCCAGAATCTGCAGATTACTGGAGAGGGCCGTAGTGAAGTCTCTGATAACGGGGACAAGATGTTTCAAC TGGACCAACGAAGCGGAACAATGAGAGAGGCAAGCCTCAAAGAAGCATCCAGCAGCAAGCAGTCGATGGGCATGTCGAGGAAAGACTCTTTCGGGGAGCT GCTGCTTCATCTACCTCGCATAGCATCTCTTCCCAAGTTCTTGTTTCACATATCGGAGGAACACGGAGATAATGAAAGTCGATAG
AA sequence Show only first row Show all	>Lus10035819 pacid=23147409 polypeptide=Lus10035819 locus=Lus10035819.g ID=Lus10035819.BGIv1.0 annot-version=v1.0 MVQLMKSDKIQTGATEAPSSIGSKVSPVKLEIVEDPLEEEHGPLNKRSKTSRSFQQWGAGANAFPVPPSQFNPLDEPSPLGLRLRKSPSLLDLIQMKLSQ GTASSTPGAKESAKPSSGVKKEGKGAGASSSIDKLKASNFPASVLRIGSWEYTARYEGELVAKCYFAKHKLVWEILEGGLKSKIEIQWSDIIGLKATVPE DGPGTLNVVLARQPLFFRETNPQPRKHTLWQATTDFTNGQASIHKQHYLQCPQGMLNKHFEKLIQCDMRLNFLSQQPEIALDSPFFEQRASVFDELDESK NQELNPVDNGQGSSAAGLQNLASPSAGHSSSLDLDRGDHTGTTSEHMSREALSPSSVMDTHAIEGRGNFESVDSRASRNWDQIKVPGLTPSMSMSDFMSH LGNCISEQMNSGNAPLTADAEESREILSDIAQYLLSDTQLTTASDEKRLMARVDSLCCLLQKDPSSSQNLQTIGEGSNKESEDGDGTFDEKRLMARVNSL CCLLQKDPAPSQNLQITGEGRSEVSDNGDKMFQLDQRSGTMREASLKEASSSKQSMGMSRKDSFGELLLHLPRIASLPKFLFHISEEHGDNESR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30780			unknown protein		Lus10035819 [exp]	0	1
AT4G30780			unknown protein		Lus10036602 [exp]	1.0	0.8993
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	1.4	0.8827
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	2.4	0.8778
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	5.0	0.8517
					Lus10000768 [exp]	5.1	0.8250
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	5.9	0.8471
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	7.3	0.8488
AT2G37480			unknown protein		Lus10024420 [exp]	9.8	0.8578
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	10.5	0.8314
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	11.7	0.7936

Compare expression of checked genes

Lus10035819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.