Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57820 48 / 2e-06 zinc ion binding (.1) AT5G18260 45 / 3e-05 RING/U-box superfamily protein (.1) AT1G75400 42 / 0.0005 RING/U-box superfamily protein (.1) AT1G19680 42 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007703 [exp] 112 / 2e-29 AT5G57820 47 / 8e-07 zinc ion binding (.1) Lus10005511 [exp] 77 / 3e-16 ND / Lus10002316 [exp] 57 / 1e-08 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180600 [exp] 83 / 2e-17 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1) Potri.001G042000 [exp] 53 / 2e-07 AT5G57820 47 / 9e-06 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035820 pacid=23147401 polypeptide=Lus10035820 locus=Lus10035820.g ID=Lus10035820.BGIv1.0 annot-version=v1.0 ATGACTGGGAAAACAACAAAAGCTCCACTAGATGGTTCATCCGAAACCACCGTTGCGTTGAAGCAGGTTAATAGCCGAGTTGTTGCCCCTAATTTGGCTG TCAAGCAGATGAAGGTCTCAAGCAATGTCAATAAAGCGCCCAAGGCCTCATCATTGGAGAATCGGGAGATTGGATTCAGTGGCAGATTAGTTTCATCTTC AAAGGGTTCTTCTGTAGCTCCTCCTAAGAGAGTTGCAGCTGCTCCTAAGATTGGAGGAACTGGAAAAGTTTCTACTCCAAGAATTTCTGGCGACTCCCAG GAAAAAGTAGTAGCAGCTCATGATAAGGTTTCTGCAGTAAGAAAAGTATCATCAGCTTTAAAGGGTTGTGTTGAATCCAAGGTAAAACCTTCAGGTACAG TGGAGAAGAAGAAGAAGGAGGCTTCAGTTTCGAAGGCACCATTGCGGAATACTCCAGCTTCGAAACCACCGTTGCAAAATACTCCAGCTTTGAAACCACC ATTGCGAACTAGTCCAACTTTGAAAGGGAAGGAGAAGATGGAAACTTCATCTCCTCCTCCTCCTAAAACTAGTGCTACTACTAAAGTAGAAAAGCTTAAG CTAGGTGGAGGAACACATCAGAGAGCTTGCACTGATTCAAAGTTGAAAAGTGCAACAGAGGTGAAGGGACAAAAGCAAGTAGGAAGGCAGAAGGTATTAG AACCTTCAAACAAACGGTTAGTGAGGAGTAGTAAGCCTTGTTTGCCGCCAAAGAAGATGAAGAAGCCAATTCAGCCAGCTGTAGAACAAGGCAACACTTT TTACCTCGTGTGGGATGAACTAGGTTTTGGAGAGGAGCAAGATTCGAAAGTCGGACAGGAATGCTTAATTTGCGAAAGGGATCTGTCGTTTGCACCAGTT CCGCCAGAGACGGAAATGGGTACTTGCAATTTTCCAGAAGTTGCAGTGCTACCTTGTGGCCATGTCTTCCACATGATTTGCTTGGATACGGTTTCTGCTA ACCAACCCTTTGAACCTACATGCTTCATGTGCGCCAACCTTTGTTGA
AA sequence Show only first row Show all	>Lus10035820 pacid=23147401 polypeptide=Lus10035820 locus=Lus10035820.g ID=Lus10035820.BGIv1.0 annot-version=v1.0 MTGKTTKAPLDGSSETTVALKQVNSRVVAPNLAVKQMKVSSNVNKAPKASSLENREIGFSGRLVSSSKGSSVAPPKRVAAAPKIGGTGKVSTPRISGDSQ EKVVAAHDKVSAVRKVSSALKGCVESKVKPSGTVEKKKKEASVSKAPLRNTPASKPPLQNTPALKPPLRTSPTLKGKEKMETSSPPPPKTSATTKVEKLK LGGGTHQRACTDSKLKSATEVKGQKQVGRQKVLEPSNKRLVRSSKPCLPPKKMKKPIQPAVEQGNTFYLVWDELGFGEEQDSKVGQECLICERDLSFAPV PPETEMGTCNFPEVAVLPCGHVFHMICLDTVSANQPFEPTCFMCANLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18260			RING/U-box superfamily protein...		Lus10035820 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000673 [exp]	2.8	0.6721
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	10.4	0.6605
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	10.8	0.6863
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	12.6	0.6922
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	16.0	0.6365
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	23.8	0.6724
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	27.0	0.6133
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	32.5	0.6635
					Lus10005748 [exp]	33.8	0.6170
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	42.3	0.6505

Compare expression of checked genes

Lus10035820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.