Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28080 2011 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G01320 1337 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G15290 1134 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G52140 310 / 7e-86 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036604 [exp] 2108 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004009 [exp] 1355 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030259 [exp] 1190 / 0 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037481 [exp] 313 / 1e-86 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 311 / 9e-86 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180100 [exp] 2321 / 0 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G102500 [exp] 2111 / 0 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031000 [exp] 1377 / 0 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G098600 [exp] 1374 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G170900 [exp] 1357 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G065300 [exp] 320 / 1e-88 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.001G271200 [exp] 318 / 2e-88 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035822 pacid=23147601 polypeptide=Lus10035822 locus=Lus10035822.g ID=Lus10035822.BGIv1.0 annot-version=v1.0 ATGGCTCCTAAAACTGGAAAAACCAAGCCTCATAAAGCCAAGGGAGACAAGAAAAAGAAGGAAGAAAAAGTTCTGCCGACTGTCGTTGAAATTACCGTCG AGACTCCCGACGAGTCGCAGGTCACTCTCAAGGGGATATCGACGGACAGGATCCTGGATGTTAGAAAGCTGTTGGCCGTACACGTGGAAACATGCCATTT CACCAACTTCTCTTTCTCCCATGAGGTAAAGGGACCCAGGCTTAAGGATTCGGCTGAAATCGTCTTGCTCAAACCATGCCACCTAACCATCGTCGAAGAG GAATATACCGAAGAGCAGGCCGTCGCTCACATTCGCCGGCTTCTCGATATTGTCGCTTGTACCACTTCCTTCGGCTCATCTTCTTCCTCCTCACCTTCGC CAAAGCCGGCTTCCGGACGTAGTAAGGAATCCGCCGGAAAGGATGGCGGCTCAACGGAATCGGGAGCGACTCCGATTAGCGGCGGCGATGACGGCACCAA GTCCAAAGCAGGAGATAAGAAGTCCGGCGCAGTGGTCAACAGTAGCAAGAGCAAGGATATATGCACGGATCTGTCTCCCAAGGGAGACGAGATGGCTGCC GGAGCCATTTCCATGTACCCGCCGCCGCGGTTAGGGCAGTTCTATGAGTTCTTCTCGTTCTCGCACCTCACGCCACCGGTCCACTATATTCGGAGATCAA ATCGGCCGTTCGCCGAAGATAAGACGGACGAGGATCTATTCCAGATAGATGTTAGGGTTTGTAGTGGGAAGCCGATGACAATTGTTACTTCGAAGAAGGG GTTTTATCCAGCTGGAAAACAAGCCCTTCTTTGCCATTCTTTGGTCAGCTTGCTACAGCAGATAAGCCGGCCTTTTGATGCTGCTTACAGAGCTCTTATG AAAGCTTTTACAGAACATAATAAGTTTGGCAATCTTCCGTATGGTTTTCGGGCAAATACATGGGTTGTGCCTCCAGTTGTTTCTGACAACCTATCTGTTT TCGCTCCACTCCCCGTGGAAGATGAAAACTGGGGTGGGAATGGTGGCGGGCAAGGAAGGGACGGTAAACATGATCACAGGCCGTGGGCAAGGGATTTCGC AGTTTTGGCAGCAATGCCTTGTAAAACTGCCGAAGAGAGACAAGTTCGTGATCGGAAAGCGTTTCTTCTGCACAGTTTATTCGTCGACATTTCTGTTTTC AGAGCTGTCAGGGCAATTAAGCAGATCATTGACAATAACCAGTGTTCTCTAAACAAGACTGACTTGTTTTCGCATGAAGAAAGGGTTGGGGATCTATTCA TTAAGGTTACCAGAGATGAAGCGGATGCAAGCACCAAGTTGGACCGTAAAAATGATGGTAGTCTAGTTCTTGGAATGCCACAGGATGAACTAGCTCGTCG GAATCTACTTAAGGGCATAACTGCTGATGAAAGTGCAACTGTTCATGATATTTCTACCCTCGGTGTTGTGATTATCCGACATTGCGGATACACTGCTGTT GTTAAAGTCTCAGCGGAAGTAGATTGGAAGGGGAATCCCATTCCCCAGGACATCAATATTGAAGATCAACCTGAAGGAGGTGCAAATGCCTTGAATGCAA ATAGCTTGAGAATGCTATTGCACAAGTCACCAACGTCTCAATCGCCGAATACAAGCCAGAGATTGCAAAATGGAGATGTCGAAAATGCACGTCAGGCCAG GGCACTTGTCCGGAAGGTACTAGAGGAAAGTCTACAGAAGTTAATTGAAGAACCTAACAAGCGTGTCAAGTCCATCAGATGGGAGCTCGGAGCATGTTGG GTTCAACATTTACAAAATCAGGCTTCAGGTAAAACTGATTCTAAAAAGCCTGAAGAAAACAAGCCCGAACCTGCTGTGAAGGGACTTGAACCTGCCGTGA AGGGACTTGGAAAGCAGGGTGCGCTGCTTAAGGATCTGAAGAAAAAAATGGATGCCAAAAATAGCAAAACAGAAGAGCAAATGGATATTTCTCTTGGCAA CAACACTGAGACTGTCAAGAAGTCAGATGGCACAAATCAGAAAGAAGAGGAGAAGAAAGACGAGAATCTGGAGGTCTTGTGGAAAAAGTTGCTTCCTGAA GCAGCATATATGCGGCTTAAAGAATCCGAAACTGGTTTTCATCTCAAGTCACCTGACGAGTTGATTGAGATGGCACATAAATACTATGCAGAGACGGCTC TTCCAAAACTGGTAGCAGATTTTGGCTCACTTGAACTGTCACCAGTTGATGGAAGAACATTGACTGATTTTATGCATACAAGGGGCCACAGATGTGTTCT TTGGGGCGTTGAACTTGCAGACAAACTCCCTCATGTGCAATCACTCTGTATACATGAAATGATCGTTCGAGCCTACAAGCACATATTACAAGCTGTTGTA TCTATGGTAAATGAAGTCGCTGACCTTACTGCCTCAGTCGCAGCATGTTTAAATATATTGTTAGGAACTCCTGCACCTGAAACGGAGGATGCAGAGATCG TGAAAGATGACGAGTTAAAGTGGAAATGGGTGGAAACCTTCCTGTTAAAGAGGTTTGGGTGGCAGTTGAAGCATGAAAGTTGCCGAGATCTACGAAAATT TGCTATTCTTCGTGGATTTTCCCACAAAGTTGGGCTTGAGCTCCTTCCCCGGGACTATGATATGGATACTGCATTCCCTTTTAGGAGGTCTGATGTCATA AGCATGATCCCTGTATATAAGCATGTTGCATGTTCATCAGCAGATGGACGCACTTTATTGGAATCCTCAAAAACTTCCTTGGATAAGGGGAAGTTGGAAG ATGCTGTTAATTTTGGCACCAAGGCACTCTCAAAGCTGGTTTCAGTTTGTGGCCCTTATCATCGAATGCCTGCCGGAGCTTACAGTTTGCTTGCAGTAGT TCTTTACCATACTGGAGATTTTAATCAGGCAACCATTTACCAGCAGAAGGCATTAGACATTAATGAAAGGGAGCTTGGACTTGACCATCCCGATACAATG AAAAGCTACGGGGATTTAGCTGTCTTCTACTACCGTCTTCAACACACAGAATTAGCATTGAAATATGTCAACCGGGCTCTCTATCTTTTGCACTTGACAT GTGGACCATCTCACCCAAACACAGCGGCCACATATATTAATGTGGCAATGATGGAAGAAGGGTTGGGAAATGCCCATGTTGCTCTTAGATACCTTCATGA GGCTCTAAAGTGTAATCAGAGGCTACTTGGGGCTGATCATATACAGACTGCTGCCAGCTACCATGCCATTGCAATTGCTCTTTCTTTGATGGAAGCTTAC TCCTTGAGTGTTCAGCATGAACAAACAACGCTACAAATATTGCAGGCAAAACTTGGTTCCGAGGATTTACGCACTCAGGACGCAGCAGCTTGGCTTGAGT ATTTCGAGTCCAAAGCTCTTGAGCAGCAGGAAGCAGCTCGTAATGGCACTCCCAAGCCAGATGCCTCAATCTCCAGTAAAGGTCACTTAAGCGTTTCAGA CCTTTTGGATTACATTACACCAGAAGCAGATTTGAAAGCAAGAGAAGCCCAAAAGAAATCTCGTGCAAAGATTAAAGGAAAACTAGGCCAGAACGGGGAA GCAGGGTCAGAGGAGTACCAGAAGGATGAAGTACTGTCTCCGACTTCCCCTATTGAGGACAATTCGAGTGATAAAGAAAACAAATCCCAGGTCCAATTCA ATGAGGCACGAGATGAGAAGAAGCCAGACATAAATCAGCCAATAATGACGAAGAGTGAAGACATTATCGTTGCACAGGAGGATGATTCAGATGAAGGGTG GCAAGAAGCTGTCCCCAAAGGTCGCTCGCTTGCTAATAGGAAATCATCATCAGGTTCAAGGAGACTTAGCCTTGCCAAGATAAACACCAACTTCATGAAT GCATCCCAGTCCTCGAGATTCCGAGGGAAACCTCCTGCTAATTTCATGTCTCCAAAAACGAGCCCGAACGATTCAACAACTCCTTCCGCGGGTGCAATGA TTCCTGTTGCTAAGAAGTTTGTTAAGAGTGCAAGTTTCAGTCCCAAAGTAAATCAAGCTGCTCCCTCTCCTTCAGCTGGTGCAACAGACAGAGTGACTAT TGCTAAATCAGCTCCTACTACTCCAGCTTCAACTGATGCCGGAGCCATTAAAACAGCTTCAGCTGGAAGCCAAATCAGCGTTCAAGCAGCTGGGAAGCTA TTCTCTTACAAGGAAGTTGCCTTGGCTCCTCCAGGGACGATTGTGAAAGCTGTAGCAGAACAGTTGCCGAAGGGAAACCTTTCGAGAGACACAAATCATG AAACAGGAGCAGTAGAGGTGACTACTTCAAAGAGTGGAGATGAAGGAACTTTACAGAAAGATCAAGCTGAGAGAATACGTGATGTTTCAGACAAAGGAAA AGGTTCTTCCAGCGAAGAGCCACAACCAGAACAGTCTGCTGCTGTTGCCTGCATCGACAAAGATGCTGAAGTGTCCAAAATTGGAATTTCCACCAGTGAA GTAGGCAATGCAGTTGAAGAACCTGACGCCTCAGAGGTTTCTAAGGAGCCGAATTCGATTCTTGTGAATCCTGAAGTACCAGAGACTAGCGTTTCGATCA GCTCCTCGCCAGCTTCCATTGATGTGGAACCCCAAACTGAAGATGTAGCCAATGGTAGGGATAAGTCATTAGCAACAGAAGTGGAAAAACAGAATGAATC TGAAAATGGGAAGGAGACAAGCAAGAAACTCTCAGCAGCTGCACCACCATTCCAACCATCAACAACAATTCCAGCTTTCGGCTCAGTTGCTGCTGTTCCA GGCTTCAAAGAACACGGTGGGCTTCTGCCACCTCCGGTAAACATTCCTCCCATGCTTCCAGTGAACCCTGTACGCAGCAGATCGCCTCATCAGTCTGCGA CAGCTAGAGTACCTTACGGCCCAAGGCTATCTGGTGGGTACAACAACAGGTCAGGGAGTCGGGTTCCAAGAAACAAACACAACTTCCATAATGGTGAACA ACATGCTGTTGGAGAAGGGAATCACTTCAGCACTCTGAGGATTATGAACCCCCATGCTGTCGAATTCATACCTGGCCAACCTTGGGTTCCAAATGGTGGT TACTTGACTTCTCAGAACGGTTTCCCGGTGTCACCAACTGGCATTATTCCTCTGTCACCAGCTGCATCACCAGTTGACATAATCTCAGTAACTCAGAATG GGCTCCTGGAATCTCCTCCGGTCAGTCCAATTGAATCCTCTAGCGAAAACCAGACTGAAACTGCTGCAGCTGAGAGCAACATTATTAGTGAAAGCTCACC CTCTGAAGCGGCAACAGCAGATGATCAACAAGGAGATCACTGCTTAAATGAGATTACTACTTCGACCGAAGAAGTGCCACCAATTGCTGCTGATGAAGTG GCGAAGCCGGCTGAGGAGAAAGCAAGCAAGCCTTGGGCAGATTACAGCGACAATGAAGCTGATGTTGTTGAGGTTACATGTTGA
AA sequence Show only first row Show all	>Lus10035822 pacid=23147601 polypeptide=Lus10035822 locus=Lus10035822.g ID=Lus10035822.BGIv1.0 annot-version=v1.0 MAPKTGKTKPHKAKGDKKKKEEKVLPTVVEITVETPDESQVTLKGISTDRILDVRKLLAVHVETCHFTNFSFSHEVKGPRLKDSAEIVLLKPCHLTIVEE EYTEEQAVAHIRRLLDIVACTTSFGSSSSSSPSPKPASGRSKESAGKDGGSTESGATPISGGDDGTKSKAGDKKSGAVVNSSKSKDICTDLSPKGDEMAA GAISMYPPPRLGQFYEFFSFSHLTPPVHYIRRSNRPFAEDKTDEDLFQIDVRVCSGKPMTIVTSKKGFYPAGKQALLCHSLVSLLQQISRPFDAAYRALM KAFTEHNKFGNLPYGFRANTWVVPPVVSDNLSVFAPLPVEDENWGGNGGGQGRDGKHDHRPWARDFAVLAAMPCKTAEERQVRDRKAFLLHSLFVDISVF RAVRAIKQIIDNNQCSLNKTDLFSHEERVGDLFIKVTRDEADASTKLDRKNDGSLVLGMPQDELARRNLLKGITADESATVHDISTLGVVIIRHCGYTAV VKVSAEVDWKGNPIPQDINIEDQPEGGANALNANSLRMLLHKSPTSQSPNTSQRLQNGDVENARQARALVRKVLEESLQKLIEEPNKRVKSIRWELGACW VQHLQNQASGKTDSKKPEENKPEPAVKGLEPAVKGLGKQGALLKDLKKKMDAKNSKTEEQMDISLGNNTETVKKSDGTNQKEEEKKDENLEVLWKKLLPE AAYMRLKESETGFHLKSPDELIEMAHKYYAETALPKLVADFGSLELSPVDGRTLTDFMHTRGHRCVLWGVELADKLPHVQSLCIHEMIVRAYKHILQAVV SMVNEVADLTASVAACLNILLGTPAPETEDAEIVKDDELKWKWVETFLLKRFGWQLKHESCRDLRKFAILRGFSHKVGLELLPRDYDMDTAFPFRRSDVI SMIPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNFGTKALSKLVSVCGPYHRMPAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNAHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAY SLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPEADLKAREAQKKSRAKIKGKLGQNGE AGSEEYQKDEVLSPTSPIEDNSSDKENKSQVQFNEARDEKKPDINQPIMTKSEDIIVAQEDDSDEGWQEAVPKGRSLANRKSSSGSRRLSLAKINTNFMN ASQSSRFRGKPPANFMSPKTSPNDSTTPSAGAMIPVAKKFVKSASFSPKVNQAAPSPSAGATDRVTIAKSAPTTPASTDAGAIKTASAGSQISVQAAGKL FSYKEVALAPPGTIVKAVAEQLPKGNLSRDTNHETGAVEVTTSKSGDEGTLQKDQAERIRDVSDKGKGSSSEEPQPEQSAAVACIDKDAEVSKIGISTSE VGNAVEEPDASEVSKEPNSILVNPEVPETSVSISSSPASIDVEPQTEDVANGRDKSLATEVEKQNESENGKETSKKLSAAAPPFQPSTTIPAFGSVAAVP GFKEHGGLLPPPVNIPPMLPVNPVRSRSPHQSATARVPYGPRLSGGYNNRSGSRVPRNKHNFHNGEQHAVGEGNHFSTLRIMNPHAVEFIPGQPWVPNGG YLTSQNGFPVSPTGIIPLSPAASPVDIISVTQNGLLESPPVSPIESSSENQTETAAAESNIISESSPSEAATADDQQGDHCLNEITTSTEEVPPIAADEV AKPAEEKASKPWADYSDNEADVVEVTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	0	1
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	1.0	0.9529
					Lus10011725 [exp]	2.0	0.9107
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	5.0	0.8981
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	6.5	0.9146
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	6.8	0.9160
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001341 [exp]	15.3	0.8618
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	17.7	0.8544
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	17.8	0.8906
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	18.3	0.8672
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	19.4	0.8502

Compare expression of checked genes

Lus10035822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.